2CXY

Crystal structure of the hBAF250b AT-rich interaction domain (ARID)

PDB DOI: https://doi.org/10.2210/pdb2CXY/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Homo sapiens
Mutation(s): Yes

Deposited: 2005-07-01 Released: 2006-10-10
Deposition Author(s): Shimada, A., Niwa, H., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.203
R-Value Work: 0.185
R-Value Observed: 0.186

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of the hBAF250b AT-rich interaction domain (ARID)

Shimada, A., Niwa, H., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 13.97 kDa
Atom Count: 1,022
Modelled Residue Count: 114
Deposited Residue Count: 125
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
BAF250b subunit	A	125	Homo sapiens	Mutation(s): 1 Gene Names: hBAF250b
UniProt & NIH Common Fund Data Resources
Find proteins for Q8NFD5 (Homo sapiens) Explore Q8NFD5 Go to UniProtKB: Q8NFD5
PHAROS: Q8NFD5 GTEx: ENSG00000049618
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8NFD5
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.203
R-Value Work: 0.185
R-Value Observed: 0.186
Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 68.87	α = 90
b = 68.87	β = 90
c = 46.204	γ = 120

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
CNS	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2006-10-10

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2006-10-10
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.