2CJM

Mechanism of CDK inhibition by active site phosphorylation: CDK2 Y15p T160p in complex with cyclin A structure

Structural Biology Knowledgebase: 2CJM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.201

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2CJM

Classification: CELL CYCLE

Total Structure Weight: 128561.26

Macromolecule Entities
Molecule Chains Length Organism Details
CELL DIVISION PROTEIN KINASE 2 A, C 298 Homo sapiens EC#: 2.7.11.22 IUBMB
Details: PHOSPHORYLATED ON T160 AND Y15
Gene Name(s): CDK2 Gene View CDKN2
CYCLIN A2 B, D 258 Homo sapiens Fragment: RESIDUES 175-432
Gene Name(s): CCNA2 Gene View CCN1 CCNA

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A, C ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
PTR
Query on PTR
A, C L-PEPTIDE LINKING C9 H12 N O6 P TYR
TPO
Query on TPO
A, C L-PEPTIDE LINKING C4 H10 N O6 P THR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.201
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 73.80 α = 90.00
b = 133.20 β = 90.00
c = 147.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-04-05
  • Released Date: 2006-04-24
  • Deposition author(s): Welburn, J.P.I., Tucker, J., Johnson, T., Lindert, L., Morgan, M., Willis, A., Noble, M.E.M., Endicott, J.A.

Revision History

  • 2013-07-10
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2013-07-10
    Type: Atom nomenclature | Details: ATOM,HETATM
  • 2013-07-10
    Type: Other | Details: REMARK 465,TER,MODRES,REMARK 100,REMARK 525,MASTER
  • 2013-07-10
    Type: Citation | Details: JRNL
  • 2013-07-10
    Type: Function and keywords | Details: KEYWDS
  • 2013-07-10
    Type: Version format compliance | Details: REMARK 4
  • 2013-07-10
    Type: Geometry validation | Details: REMARK 500
  • 2013-07-10
    Type: Non-polymer description | Details: HETSYN,FORMUL,REMARK 620,HET
  • 2013-07-10
    Type: Binding sites and description | Details: REMARK 800,SITE
  • 2013-07-10
    Type: Source and taxonomy | Details: SOURCE
  • 2013-07-10
    Type: Entry authorship | Details: AUTHOR
  • 2013-07-10
    Type: Polymer description | Details: SEQRES
  • 2013-07-10
    Type: Linkage | Details: CONECT,LINK