2C7E

REVISED ATOMIC STRUCTURE FITTING INTO A GROEL(D398A)-ATP7 CRYO-EM MAP (EMD 1047)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 14.9 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.5 of the entry. See complete history


Literature

ATP-Bound States of Groel Captured by Cryo-Electron Microscopy

Ranson, N.A.Farr, G.W.Roseman, A.M.Gowen, B.Fenton, W.A.Horwich, A.L.Saibil, H.R.

(2001) Cell 107: 869

  • DOI: https://doi.org/10.1016/s0092-8674(01)00617-1
  • Primary Citation of Related Structures:  
    1GR5, 1GRU, 2C7E

  • PubMed Abstract: 

    The chaperonin GroEL drives its protein-folding cycle by cooperatively binding ATP to one of its two rings, priming that ring to become folding-active upon GroES binding, while simultaneously discharging the previous folding chamber from the opposite ring. The GroEL-ATP structure, determined by cryo-EM and atomic structure fitting, shows that the intermediate domains rotate downward, switching their intersubunit salt bridge contacts from substrate binding to ATP binding domains. These observations, together with the effects of ATP binding to a GroEL-GroES-ADP complex, suggest structural models for the ATP-induced reduction in affinity for polypeptide and for cooperativity. The model for cooperativity, based on switching of intersubunit salt bridge interactions around the GroEL ring, may provide general insight into cooperativity in other ring complexes and molecular machines.


  • Organizational Affiliation

    Department of Crystallography, Birkbeck College London, Malet Street, London WC1E 7HX, United Kingdom. n.ranson@bbk.ac.uk


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
60 KDA CHAPERONIN
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L, M, N
547Escherichia coliMutation(s): 2 
UniProt
Find proteins for P0A6F5 (Escherichia coli (strain K12))
Explore P0A6F5 
Go to UniProtKB:  P0A6F5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A6F5
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ATP
Query on ATP

Download Ideal Coordinates CCD File 
CA [auth E]
FA [auth F]
IA [auth G]
Q [auth A]
T [auth B]
CA [auth E],
FA [auth F],
IA [auth G],
Q [auth A],
T [auth B],
W [auth C],
Z [auth D]
ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
K
Query on K

Download Ideal Coordinates CCD File 
AA [auth E]
DA [auth F]
GA [auth G]
O [auth A]
R [auth B]
AA [auth E],
DA [auth F],
GA [auth G],
O [auth A],
R [auth B],
U [auth C],
X [auth D]
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
MG
Query on MG

Download Ideal Coordinates CCD File 
BA [auth E]
EA [auth F]
HA [auth G]
P [auth A]
S [auth B]
BA [auth E],
EA [auth F],
HA [auth G],
P [auth A],
S [auth B],
V [auth C],
Y [auth D]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 14.9 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONSPIDER

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2006-02-16
    Type: Initial release
  • Version 1.1: 2011-05-08
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-08-23
    Changes: Data collection
  • Version 1.4: 2018-01-24
    Changes: Source and taxonomy
  • Version 1.5: 2019-10-23
    Changes: Data collection, Other