2C78

EF-TU COMPLEXED WITH A GTP ANALOG AND THE ANTIBIOTIC PULVOMYCIN

Structural Biology Knowledgebase: 2C78 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.197

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2C78

Classification: HYDROLASE

Total Structure Weight: 46067.86

Macromolecule Entities
Molecule Chains Length Organism Details
ELONGATION FACTOR TU-A A 405 Thermus thermophilus EC#: 3.1.5.1 IUBMB
Mutation: R264K
Details: TUFA GENE
Gene Name(s): tufA tuf TTHA1694
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PUL
Query on PUL

A (1S,2S,3E,5E,7E,10S,11S,12S)-12-[(2R,4E,6E,8Z,10R,12E,14E,16Z,18S,19Z)- 10,18-DIHYDROXY-12,16,19-TRIMETHYL-11,22- DIOXOOXACYCLODOCOSA-4,6,8,12,14,16,19-HEPTAEN- 2-YL]-2,11-DIHYDROXY-1,10-DIMETHYL-9-OXOTRIDECA- 3,5,7-TRIEN-1-YL 6-DEOXY-2,4-DI-O-METHYL- BETA-L-GALACTOPYRANOSIDE
PULVOMYCIN (Synonym)
C47 H66 O13
FXSFWUNCIOIMAC-VXILMCRLSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GNP
Query on GNP

A PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
C10 H17 N6 O13 P3
UQABYHGXWYXDTK-UUOKFMHZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.197
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 86.69 α = 90.00
b = 86.69 β = 90.00
c = 105.51 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-11-18
  • Released Date: 2006-03-16
  • Deposition author(s): Parmeggiani, A., Krab, I.M., Okamura, S., Nielsen, R.C., Nyborg, J., Nissen, P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4