STRUCTURE OF AN UNLIGANDED AND FULLY-GLYCOSYLATED SIV GP120 ENVELOPE GLYCOPROTEIN DOI:10.2210/pdb2bf1/pdb

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Virus Protein Structure Weight: 46066.67 Molecule: EXTERIOR MEMBRANE GLYCOPROTEIN GP120 Polymer: 1 Type: protein Length: 316 Chains: A Fragment: GP120 CORE, RESIDUES 66-109,209-311,342-502 Organism Simian immunodeficiency virus Gene Name env UniProtKB:   Protein Feature View | Search PDB | Q07374         Source Hide Polymer: 1 Scientific Name: Simian immunodeficiency virus   Taxonomy   Common Name: Siv Expression System: Trichoplusia ni   Polymer: 3 Scientific Name: Synthetic construct   Taxonomy     Polymer: 4 Scientific Name: Synthetic construct   Taxonomy     Polymer: 5 Scientific Name: Synthetic construct   Taxonomy     Polymer: 6 Scientific Name: Synthetic construct   Taxonomy     Polymer: 7 Scientific Name: Synthetic construct   Taxonomy     Polymer: 8 Scientific Name: Synthetic construct   Taxonomy     Polymer: 10 Scientific Name: Synthetic construct   Taxonomy     Polymer: 11 Scientific Name: Synthetic construct   Taxonomy         Ligand Chemical Component Hide Identifier Formula Name Interactions BMA Search  Download  C6 H12 O6 BETA-D-MANNOSE   Ligand Explorer FUC Search  Download  C6 H12 O5 ALPHA-L-FUCOSE   Ligand Explorer MAN Search  Download  C6 H12 O6 ALPHA-D-MANNOSE   Ligand Explorer NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer NDG Search  Download  C8 H15 N O6 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE   Ligand Explorer     External Domain Annotations Hide CATH Classification v3.4.0: 1 Domain - data from CATH   Pfam Classification: 3 Domains - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PQS (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Chen, B.,  Vogan, E.M.,  Gong, H.,  Skehel, J.J.,  Wiley, D.C.,  Harrison, S.C. Deposition:   2004-12-02 Release:   2005-02-17 Last Modified (REVDAT):   2009-02-24     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   4.00 R-Value: 0.385 (obs.) R-Free: 0.388 Space Group: P 43 21 2 Unit Cell:   Length [Å] Angles [°] a = 108.05 α = 90.00  b = 108.05 β = 90.00  c = 117.70 γ = 90.00