30S ribosomal subunit, tRNAs, mRNA and release factor RF1 from a crystal structure of the whole ribosomal complex. This file contains the 30S subunit, tRNAs, mRNA and release factor RF1 from a crystal structure of the whole ribosomal complex". The entire crystal structure contains one 70S ribosome, tRNAs, mRNA and release factor RF1 and is described in remark 400. DOI:10.2210/pdb2b64/pdb   NDB ID: RR0128

2B64   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Split Entry The asymmetric unit for this structure is composed of multiple PDB entries: 2B64   2B66     Download All Files      Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Ribosome Structure Weight: 878791.40 Molecule: 16S ribosomal RNA Polymer: 1 Type: rna Length: 1522 Chains: A Organism Thermus thermophilus HB8 Molecule: P-site tRNA (Phe) Polymer: 2 Type: rna Length: 76 Chains: V Organism Escherichia coli Molecule: E-site tRNA (Phe) Polymer: 3 Type: rna Length: 76 Chains: W Organism Escherichia coli Molecule: 5'-R(*AP*UP*GP*UP*UP*CP*UP*AP*GP*UP*AP*CP*AP*AP*UP*AP*AP*U)-3' Polymer: 4 Type: rna Length: 18 Chains: X Details: mRNA Molecule: 30S ribosomal protein S2 Polymer: 5 Type: protein Length: 256 Chains: B Organism Thermus thermophilus HB8 Gene Names rpsB rps2 TTHA0861 UniProtKB:   Protein Feature View | Search PDB | P80371     Molecule: 30S ribosomal protein S3 Polymer: 6 Type: protein Length: 239 Chains: C Organism Thermus thermophilus HB8 Gene Names rpsC rps3 TTHA1686 UniProtKB:   Protein Feature View | Search PDB | P80372     Molecule: 30S ribosomal protein S4 Polymer: 7 Type: protein Length: 209 Chains: D Organism Thermus thermophilus HB8 Gene Names rpsD rps4 TTHA1665 UniProtKB:   Protein Feature View | Search PDB | P80373     Molecule: 30S ribosomal protein S5 Polymer: 8 Type: protein Length: 162 Chains: E Organism Thermus thermophilus HB8 Gene Names rpsE TTHA1675 UniProtKB:   Protein Feature View | Search PDB | Q5SHQ5     Molecule: 30S ribosomal protein S6 Polymer: 9 Type: protein Length: 101 Chains: F Organism Thermus thermophilus HB8 Gene Names rpsF TTHA0245 UniProtKB:   Protein Feature View | Search PDB | Q5SLP8     Molecule: 30S ribosomal protein S7 Polymer: 10 Type: protein Length: 156 Chains: G Organism Thermus thermophilus HB8 Gene Names rpsG rps7 TTHA1696 UniProtKB:   Protein Feature View | Search PDB | P17291     Molecule: 30S ribosomal protein S8 Polymer: 11 Type: protein Length: 138 Chains: H Organism Thermus thermophilus HB8 Gene Names rpsH TTHA1678 UniProtKB:   Protein Feature View | Search PDB | Q5SHQ2     Molecule: 30S ribosomal protein S9 Polymer: 12 Type: protein Length: 128 Chains: I Organism Thermus thermophilus HB8 Gene Names rpsI rps9 TTHA1464 UniProtKB:   Protein Feature View | Search PDB | P80374     Molecule: 30S ribosomal protein S10 Polymer: 13 Type: protein Length: 105 Chains: J Organism Thermus thermophilus HB8 Gene Names rpsJ TTHA1693 UniProtKB:   Protein Feature View | Search PDB | Q5SHN7     Molecule: 30S ribosomal protein S11 Polymer: 14 Type: protein Length: 129 Chains: K Organism Thermus thermophilus HB8 Gene Names rpsK rps11 TTHA1666 UniProtKB:   Protein Feature View | Search PDB | P80376     Molecule: 30S ribosomal protein S12 Polymer: 15 Type: protein Length: 135 Chains: L Organism Thermus thermophilus HB8 Gene Names rpsL TTHA1697 UniProtKB:   Protein Feature View | Search PDB | Q5SHN3     Molecule: 30S ribosomal protein S13 Polymer: 16 Type: protein Length: 126 Chains: M Organism Thermus thermophilus HB8 Gene Names rpsM rps13 TTHA1667 UniProtKB:   Protein Feature View | Search PDB | P80377     Molecule: 30S ribosomal protein S14 Polymer: 17 Type: protein Length: 61 Chains: N Organism Thermus thermophilus HB8 Gene Names rpsZ rpsN TTHA1679 UniProtKB:   Protein Feature View | Search PDB | Q5SHQ1     Molecule: 30S ribosomal protein S15 Polymer: 18 Type: protein Length: 89 Chains: O Organism Thermus thermophilus HB8 Gene Names rpsO TTHA1138 UniProtKB:   Protein Feature View | Search PDB | Q5SJ76     Molecule: 30S ribosomal protein S16 Polymer: 19 Type: protein Length: 88 Chains: P Organism Thermus thermophilus HB8 Gene Names rpsP TTHA1035 UniProtKB:   Protein Feature View | Search PDB | Q5SJH3     Molecule: 30S ribosomal protein S17 Polymer: 20 Type: protein Length: 105 Chains: Q Organism Thermus thermophilus HB8 Gene Names rpsQ TTHA1683 UniProtKB:   Protein Feature View | Search PDB | Q5SHP7     Molecule: 30S ribosomal protein S18 Polymer: 21 Type: protein Length: 88 Chains: R Organism Thermus thermophilus HB8 Gene Names rpsR TTHA0243 UniProtKB:   Protein Feature View | Search PDB | Q5SLQ0     Molecule: 30S ribosomal protein S19 Polymer: 22 Type: protein Length: 93 Chains: S Organism Thermus thermophilus HB8 Gene Names rpsS TTHA1688 UniProtKB:   Protein Feature View | Search PDB | Q5SHP2     Molecule: 30S ribosomal protein S20 Polymer: 23 Type: protein Length: 106 Chains: T Organism Thermus thermophilus HB8 Gene Names rpsT rps20 TTHA1397 UniProtKB:   Protein Feature View | Search PDB | P80380     Molecule: 30S ribosomal protein Thx Polymer: 24 Type: protein Length: 27 Chains: U Organism Thermus thermophilus HB8 Gene Names rpsU TTHA1396 UniProtKB:   Protein Feature View | Search PDB | Q5SIH3     Molecule: Peptide chain release factor 1 Polymer: 25 Type: protein Length: 354 Chains: Y Organism Thermus thermophilus HB8 Gene Names prfA TTHA1940 UniProtKB:   Protein Feature View | Search PDB | P96077         Source Hide Polymer: 1 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 2 Scientific Name: Escherichia coli   Taxonomy   Expression System: Escherichia coli   Polymer: 3 Scientific Name: Escherichia coli   Taxonomy   Expression System: Escherichia coli   Polymer: 4 Scientific Name: Synthetic construct   Taxonomy     Polymer: 5 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 6 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 7 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 8 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 9 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 10 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 11 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 12 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 13 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 14 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 15 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 16 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 17 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 18 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 19 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 20 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 21 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 22 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 23 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 24 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 25 Scientific Name: Thermus thermophilus   Taxonomy   Expression System: Escherichia coli       Related PDB Entries Hide Identifier Details 2B66  50S ribosomal subunit from a crystal structure of release factor RF1, tRNAs and mRNA bound to the ribosome  2B9M  30S ribosomal subunit from a crystal structure of release factor RF2, tRNAs and mRNA bound to the ribosome  2B9N  50S ribosomal subunit from a crystal structure of release factor RF2, tRNAs and mRNA bound to the ribosome  2B9O  30S ribosomal subunit, tRNAs and mRNA from a crystal structure of the whole ribosomal complex with a stop codon in the A-site  2B9P  50S ribosomal subunit from a crystal structure of the ribosome in complex with tRNAs and mRNA with a stop codon in the A-site      Modified Residues Hide Identifier Formula Parent Type YYG Search  C21 H29 N6 O12 P G rnaLinking PSU Search  C9 H13 N2 O9 P U rnaLinking     External Domain Annotations Hide SCOP Classification v1.75: 22 Domains - data from SCOP   Pfam Classification: 24 Domains - data from Pfam   GO Terms: 155 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: RR0128     Data in orange boxes are gathered from external resources (when available). 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Biological Assembly            View in 3D More Images... Composite of PDB entries (2B64 and 2B66)         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Petry, S.,  Brodersen, D.E.,  Murphy IV, F.V.,  Dunham, C.M.,  Selmer, M.,  Tarry, M.J.,  Kelley, A.C.,  Ramakrishnan, V. Deposition:   2005-09-30 Release:   2006-01-10 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Source and taxonomy 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors Resolution[Å]:   5.90 R-Value: 0.353 (obs.) R-Free: 0.371 Space Group: P 43 21 2 Unit Cell:   Length [Å] Angles [°] a = 518.99 α = 90.00  b = 518.99 β = 90.00  c = 365.14 γ = 90.00      Molecule of the Month Hide Ribosomal Subunits Ribosome Aminoglycoside Antibiotics Transfer-Messenger RNA