2ATF

X-RAY STRUCTURE OF cysteine dioxygenase type I FROM MUS MUSCULUS MM.241056


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.179

Literature

Macromolecules
Sequence Display for 2ATF

Classification: OXIDOREDUCTASE

Total Structure Weight: 23276.22

Macromolecule Entities
Molecule Chains Length Organism Details
Cysteine dioxygenase type I A 200 Mus musculus EC#: 1.13.11.20 IUBMB
Mutation: M73M, M117M, M179M
Gene Name(s): Cdo1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

A NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.179
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 57.55 α = 90.00
b = 57.55 β = 90.00
c = 122.08 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-08-24
  • Released Date: 2005-10-18
  • Deposition author(s): Wesenberg, G.E., Phillips Jr., G.N., Mccoy, J.G., Bitto, E., Bingman, C.A., Allard, S.T.M., Center for Eukaryotic Structural Genomics (CESG)

Revision History

  • Version 1_0: 2005-10-18

    Type: Initial release

  • Version 1_1: 2007-10-16

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-10-11

    Type: Refinement description