2ADF

Crystal Structure and Paratope Determination of 82D6A3, an Antithrombotic Antibody Directed Against the von Willebrand factor A3-Domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.191

Literature

Macromolecules
Sequence Display for 2ADF

Classification: BLOOD CLOTTING / IMMUNE SYSTEM

Total Structure Weight: 67880.02

Macromolecule Entities
Molecule Chains Length Organism Details
Von Willebrand factor A 196 Homo sapiens Fragment: A3 domain
Gene Name(s): VWF Gene View F8VWF
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
82D6A3 IgG H 218 Mus musculus Fragment: FAB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
82D6A3 IgG L 209 Mus musculus Fragment: FAB

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

H, L SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

H GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACY
Query on ACY

A ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.191
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 72.18 α = 90.00
b = 89.08 β = 90.00
c = 123.51 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-07-20
  • Released Date: 2005-12-06
  • Deposition author(s): Staelens, S., Hadders, M.A., Vauterin, S., Platteau, C., Vanhoorelbeke, K., Huizinga, E.G., Deckmyn, H.

Revision History

  • Version 1_0: 2005-12-06

    Type: Initial release

  • Version 1_1: 2007-09-19

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Non-polymer description, Version format compliance