2A3L

X-Ray Structure of Adenosine 5'-Monophosphate Deaminase from Arabidopsis Thaliana in Complex with Coformycin 5'-Phosphate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.34 Å
  • R-Value Free: 0.323
  • R-Value Work: 0.237

Literature

Macromolecules
Sequence Display for 2A3L

Classification: HYDROLASE

Total Structure Weight: 80934.41

Macromolecule Entities
Molecule Chains Length Organism Details
AMP deaminase A 701 Arabidopsis thaliana Mutation: I139M
Gene Name(s): AMPD FAC1 At2g38280 F16M14.21
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CF5
Query on CF5

A COFORMYCIN 5'-PHOSPHATE
C11 H17 N4 O8 P
LWLMFZVGOXTQAI-LODYRLCVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.34 Å
  • R-Value Free: 0.323
  • R-Value Work: 0.237
  • Space Group: P 62 2 2

Unit Cell:

Length (Å) Angle (°)
a = 131.32 α = 90.00
b = 131.32 β = 90.00
c = 208.25 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-06-25
  • Released Date: 2005-07-19
  • Deposition author(s): Han, B.W., Wesenberg, G.E., Phillips Jr., G.N., Bitto, E., Bingman, C.A., Allard, S.T.M., Center for Eukaryotic Structural Genomics (CESG)

Revision History

  • 2008-04-30
    Type: Version format compliance
  • 2011-07-13
    Type: Derived calculations, Version format compliance