2A0Q

Structure of thrombin in 400 mM potassium chloride


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 2A0Q

Classification: HYDROLASE

Total Structure Weight: 66386.66

Macromolecule Entities
Molecule Chains Length Organism Details
Thrombin, light chain A, C 30 Homo sapiens EC#: 3.4.21.5 IUBMB
Gene Name(s): F2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Thrombin, heavy chain B, D 257 Homo sapiens EC#: 3.4.21.5 IUBMB
Mutation: R77AA
Gene Name(s): F2 Gene View

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDG
Query on NDG

B 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
C8 H15 N O6
OVRNDRQMDRJTHS-PVFLNQBWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

B, D POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

D CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.195
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 58.51 α = 90.00
b = 69.74 β = 90.00
c = 158.16 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-06-16
  • Released Date: 2005-07-12
  • Deposition author(s): Papaconstantinou, M., Carrell, C.J., Pineda, A.O., Bobofchak, K.M., Mathews, F.S., Flordellis, C.S., Maragoudakis, M.E., Tsopanoglou, N.E., di Cera, E.

Revision History

  • 2008-04-30
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance