209D

Structural, physical and biological characteristics of RNA:DNA binding agent N8-actinomycin D


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Observed: 0.173

Literature

Macromolecules
Sequence Display for 209D

Classification: DNA / ANTIBIOTIC

Total Structure Weight: 6113.67


Macromolecule Entities
Molecule Chains Length Organism Details
N8-ACTINOMYCIN D C 11 Streptomyces antibioticus Mutation: X6X
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3') A, B 8 synthetic

Small Molecules
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000011
Query on PRD_000011
C N8-Actinomycin D Polypeptide /
Antibiotic
Ligand Explorer

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Observed: 0.173
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 62.30 α = 90.00
b = 62.30 β = 90.00
c = 42.97 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-05-01
  • Released Date: 1995-10-15
  • Deposition author(s): Shinomiya, M., Chu, W., Carlson, R.G., Weaver, R.F., Takusagawa, F.

Revision History

  • Version 1_0: 1995-10-15

    Type: Initial release

  • Version 1_1: 2011-06-14

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2011-07-27

    Type: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary

  • Version 1_4: 2012-12-12

    Type: Other