1Z4Y
Parainfluenza Virus 5 (SV5) Hemagglutinin-Neuraminidase (HN) (pH 8.0)
- PDB DOI: https://doi.org/10.2210/pdb1Z4Y/pdb
- Classification: HYDROLASE
- Organism(s): Mammalian orthorubulavirus 5
- Expression System: Trichoplusia ni
- Mutation(s): No 
- Deposited: 2005-03-16 Released: 2005-05-24 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.235 
- R-Value Work: 0.216 
- R-Value Observed: 0.217 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Hemagglutinin-neuraminidase | 532 | Mammalian orthorubulavirus 5 | Mutation(s): 0  Gene Names: HN EC: 3.2.1.18 | ||
UniProt | |||||
Find proteins for P04850 (Parainfluenza virus 5 (strain W3)) Explore P04850  Go to UniProtKB:  P04850 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04850 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | D [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
CA Query on CA | E [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.235 
- R-Value Work: 0.216 
- R-Value Observed: 0.217 
- Space Group: P 61 2 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 137.6 | α = 90 |
b = 137.6 | β = 90 |
c = 184.95 | γ = 120 |
Software Name | Purpose |
---|---|
SCALEPACK | data scaling |
CNS | refinement |
PDB_EXTRACT | data extraction |
CNS | phasing |
Entry History 
Deposition Data
- Released Date: 2005-05-24  Deposition Author(s): Yuan, P., Thompson, T.B., Wurzburg, B.A., Paterson, R.G., Lamb, R.A., Jardetzky, T.S.
Revision History (Full details and data files)
- Version 1.0: 2005-05-24
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Non-polymer description, Structure summary - Version 2.1: 2023-08-23
Changes: Data collection, Database references, Refinement description, Structure summary