1YOK

crystal structure of human LRH-1 bound with TIF-2 peptide and phosphatidylglycerol


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.230

Literature

Macromolecules
Sequence Display for 1YOK

Classification: TRANSCRIPTION

Total Structure Weight: 33965.38

Macromolecule Entities
Molecule Chains Length Organism Details
Orphan nuclear receptor NR5A2 A 256 Homo sapiens Fragment: sequence database residues 300-541: contains ligand binding domain (residues 346-388)
Gene Name(s): NR5A2 Gene View B1F CPF FTF
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Nuclear receptor coactivator 2 B, C 14 Homo sapiens Fragment: sequence database residues 740-753
Gene Name(s): NCOA2 Gene View BHLHE75 SRC2 TIF2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
P6L
Query on P6L

A (2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}- 2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL (8E)-OCTADEC- 8-ENOATE
C40 H75 O10 P
WLVNRDXLPAAELE-GDRYEXQRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.230
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 59.94 α = 90.00
b = 67.20 β = 90.00
c = 79.57 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-01-27
  • Released Date: 2005-07-19
  • Deposition author(s): Krylova, I.N., Sablin, E.P., Moore, J., Xu, R.X., Waitt, G.M., MacKay, J.A., Juzumiene, D., Bynum, J.M., Madauss, K., Montana, V., Lebedeva, L., Suzawa, M., Williams, J.D., Williams, S.P., Guy, R.K., Thornton, J.W., Fletterick, R.J., Willson, T.M., Ingraham, H.A.

Revision History

  • Version 1_0: 2005-07-19

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance