1YML

Crystal Structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the sulfenic form

Structural Biology Knowledgebase: 1YML SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.191

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1YML

Classification: HYDROLASE CELL CYCLE

Total Structure Weight: 20733.45

Macromolecule Entities
Molecule Chains Length Organism Details
M-phase inducer phosphatase 2 A 175 Homo sapiens EC#: 3.1.3.48 IUBMB
Fragment: catalytic domain
Mutation: C473X
Gene Name(s): CDC25B Gene View CDC25HU2

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSO
Query on CSO
A L-PEPTIDE LINKING C3 H7 N O3 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.191
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 49.87 α = 90.00
b = 71.08 β = 90.00
c = 74.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-01-21
  • Released Date: 2005-04-12
  • Deposition author(s): Buhrman, G.K., Parker, B., Sohn, J., Rudolph, J., Mattos, C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4