1XNY

Biotin and propionyl-CoA bound to Acyl-CoA Carboxylase Beta Subunit from S. coelicolor (PccB)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 1XNY

Classification: LIGASE

Total Structure Weight: 116584.14

Macromolecule Entities
Molecule Chains Length Organism Details
propionyl-CoA carboxylase complex B subunit A, B 530 Streptomyces coelicolor EC#: 6.4.1.3 IUBMB
Fragment: B subunit
Details: complexed with propionyl coenzyme A and biotin
Gene Name(s): pccB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1VU
Query on 1VU

A, B propionyl Coenzyme A
C24 H40 N7 O17 P3 S
QAQREVBBADEHPA-IEXPHMLFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BTN
Query on BTN

A, B BIOTIN
C10 H16 N2 O3 S
YBJHBAHKTGYVGT-ZKWXMUAHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.214
  • Space Group: P 63

Unit Cell:

Length (Å) Angle (°)
a = 166.74 α = 90.00
b = 166.74 β = 90.00
c = 79.22 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-10-05
  • Released Date: 2004-11-09
  • Deposition author(s): Diacovich, L., Mitchell, D.L., Pham, H., Gago, G., Melgar, M.M., Khosla, C., Gramajo, H., Tsai, S.-C.

Revision History

  • Version 1_0: 2004-11-09

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Version format compliance

  • Version 1_3: 2015-09-30

    Type: Non-polymer description