1X7A

Porcine Factor IXa Complexed to 1-{3-[amino(imino)methyl]phenyl}-N-[4-(1H-benzimidazol-1-yl)-2-fluorophenyl]-3-(trifluoromethyl)-1H-pyrazole-5-carboxamide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Observed: 0.216

Literature

Macromolecules
Sequence Display for 1X7A

Classification: blood clotting hydrolase

Total Structure Weight: 43018.46

Macromolecule Entities
Molecule Chains Length Organism Details
Coagulation Factor IXa C 235 Sus scrofa EC#: 3.4.21.22 IUBMB
Fragment: heavy chain, proteinase
Mutation: V174F, L192Q
Gene Name(s): F9 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Coagulation Factor IX, light chain L 146 Sus scrofa EC#: 3.4.21.22 IUBMB
Fragment: light chain
Gene Name(s): F9 Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
187
Query on 187

C 1-{3-[AMINO(IMINO)METHYL]PHENYL}-N-[4-(1H- BENZIMIDAZOL-1-YL)-2-FLUOROPHENYL]-3-(TRIFLUOROMETHYL)- 1H-PYRAZOLE-5-CARBOXAMIDE
C25 H17 F4 N7 O
TWBHVKYRNOGUJS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
187 Ki: 13 nM (88) BindingDB

N/A in BindingMoad
Ki: 13 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Observed: 0.216
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 129.00 α = 90.00
b = 129.00 β = 90.00
c = 71.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-08-13
  • Released Date: 2005-08-16
  • Deposition author(s): Alexander, R.S., Smallwood, A.M., Smallheer, J.M., Wang, J., Wang, S., Nakajima, S., Rossi, K.A., Barbera, F., Burdick, D., Luettgen, J.M.

Revision History

  • Version 1_0: 2005-08-16

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance