1WOG

Crystal Structure of Agmatinase Reveals Structural Conservation and Inhibition Mechanism of the Ureohydrolase Superfamily


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.223

Literature

Macromolecules
Sequence Display for 1WOG

Classification: HYDROLASE

Total Structure Weight: 197376.94

Macromolecule Entities
Molecule Chains Length Organism Details
agmatinase A, B, C..., D, E, FA, B, C, D, E, F 305 Deinococcus radiodurans EC#: 3.5.3.11 IUBMB
Gene Name(s): DR_A0149
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
16D
Query on 16D

A, B, C, D, E, F HEXANE-1,6-DIAMINE
1,6-DIAMINOHEXANE (Synonym)
C6 H16 N2
NAQMVNRVTILPCV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B, C, D, E, F MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.223
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 81.77 α = 90.00
b = 131.44 β = 90.00
c = 168.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-08-18
  • Released Date: 2004-09-07
  • Deposition author(s): Ahn, H.J., Kim, K.H., Lee, J., Ha, J.-Y., Lee, H.H., Kim, D., Yoon, H.-J., Kwon, A.-R., Suh, S.W.

Revision History

  • Version 1_0: 2004-09-07

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance