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SPINACH RUBISCO IN COMPLEX WITH 2-CARBOXYARABINITOL 2 BISPHOSPHATE AND CALCIUM.
1UPP
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Lyase
    Structure Weight: 271541.19
    Molecule: RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN
    Polymer: 1 Type: protein Length: 475
    Chains: A, C, E, G
    EC#: 4.1.1.39   
    Organism: Spinacia oleracea
    Gene Name: rbcL
    UniProtKB: Protein Feature View | Search PDB | P00875  
    Molecule: RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
    Polymer: 2 Type: protein Length: 123
    Chains: I, J, K, L
    EC#: 4.1.1.39   
    Details: THIS IS THE SECOND STRUCTURE OF THIS COMPLEX THAT IS BEING SUBMITTED. THE PREVOUS STRUCTURE, PDB ID CODE 1UPM, WAS OBTAINED FROM A CRYSTAL OF RUBISCO-CA COOCRYSTALLIZED WITH 2-CABP WHERAS THIS STRUCTURE IS FROM A RUBISCO-CA/3PGA CRYSTAL WHICH WAS SOAKED WITH 2-CABP
    Organism: Spinacia oleracea
    Gene Name: RBCS2
    UniProtKB: Protein Feature View | Search PDB | Q43832  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Spinacia oleracea   Taxonomy   Common Name: Spinach  
    Polymer: 2
    Scientific Name: Spinacia oleracea   Taxonomy   Common Name: Spinach  
     
  •   Related PDB Entries Hide
    Identifier Details
    1AA1  ACTIVATED SPINACH RUBISCO IN COMPLEX WITH THE PRODUCT 3-PHOSPHOGLYCERATE 
    1AUS  ACTIVATED UNLIGANDED SPINACH RUBISCO 
    1IR1  CRYSTAL STRUCTURE OF SPINACH RIBULOSE-1,5- BISPHOSPHATECARBOXYLASE/OXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+AND 2- CARBOXYARABINITOL-1,5-BISPHOSPHATE 
    1RBO  SPINACH RUBISCO IN COMPLEX WITH THE INHIBITOR 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE 
    1RCO  SPINACH RUBISCO IN COMPLEX WITH THE INHIBITOR D-XYLULOSE-2,2-DIOL-1,5- BISPHOSPHATE 
    1RCX  NON-ACTIVATED SPINACH RUBISCO IN COMPLEX WITH ITS SUBSTRATE RIBULOSE-1,5-BISPHOSPHATE 
    1RXO  ACTIVATED SPINACH RUBISCO IN COMPLEX WITH ITS SUBSTRATE RIBULOSE-1,5-BISPHOSPHATE AND CALCIUM 
    1UPM  ACTIVATED SPINACH RUBISCO COMPLEXED WITH 2-CARBOXYARABINITOL 2 BISPHOSPHAT AND CA2+ 
    8RUC  ACTIVATED SPINACH RUBISCO COMPLEXED WITH 2- CARBOXYARABINITOL BISPHOSPHATE 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CA
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    CA Ca
    CALCIUM ION
    CAP
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    CAP C6 H14 O13 P2
    2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
    CAP:1UPP
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    KCX
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    KCX C7 H14 N2 O4 LYS lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PQS (software)
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  •   Deposition Summary Hide
    Authors:   Karkehabadi, S.,  Taylor, T.C.,  Andersson, I.

    Deposition:   2003-10-09
    Release:   2003-10-14
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.30
    R-Value: 0.259 (obs.)
    R-Free: 0.307
    Space Group: C 2 2 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 155.88 α = 90.00 
    b = 156.25 β = 90.00 
    c = 199.75 γ = 90.00