Crystal Structure Complex Between the Lactococcus Lactis FPG (Mutm) and a FAPY-dG Containing DNA
DOI:10.2210/pdb1tdz/pdb   NDB ID: PD0551
1TDZ
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 39980.89
    Molecule: 5'-D(*CP*TP*CP*TP*TP*TP*(FOX)P*TP*TP*TP*CP*TP*CP*G)-3'
    Polymer: 1 Type: dna Length: 14
    Chains: B
    Molecule: 5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3'
    Polymer: 2 Type: dna Length: 14
    Chains: C
    Molecule: formamidopyrimidine-DNA glycosylase
    Polymer: 3 Type: protein Length: 272
    Chains: A
    EC#: 3.2.2.23   
    Organism: Lactococcus lactis
    Gene Names: mutM fpg
    UniProtKB: Search PDB | P42371   Protein Feature View
     
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  • MolProbity Ramachandran Plot
     

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  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Lactococcus lactis   Taxonomy   Expression System: Escherichia coli  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    GOL
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    GOL C3 H8 O3
    GLYCEROL
    ZN
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    ZN Zn
    ZINC ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    FOX
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    FOX C11 H18 N5 O7 P DG dnaLinking
     
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  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:PD0551
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Coste, F.,  Ober, M.,  Carell, T.,  Boiteux, S.,  Zelwer, C.,  Castaing, B.

    Deposition:   2004-05-24
    Release:   2004-09-07
    Last Modified (REVDAT):   2011-07-13
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
    2011-07-13
    Non-polymer description
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.80
    R-Value: 0.180 (obs.)
    R-Free: 0.207
    Space Group: P 41 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 91.41 α = 90.00 
    b = 91.41 β = 90.00 
    c = 141.57 γ = 90.00