1T6J

Crystal Structure of Phenylalanine Ammonia Lyase from Rhodosporidium toruloides


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.299
  • R-Value Work: 0.243

Literature

Macromolecules
Sequence Display for 1T6J

Classification: LYASE

Total Structure Weight: 155504.03

Macromolecule Entities
Molecule Chains Length Organism Details
phenylalanine ammonia-lyase A, B 716 Rhodotorula toruloides EC#: 4.3.1.25 IUBMB
Mutation: M1M, M51M, M107M, M169M, A211X, S211X, G211X, M250M, M278M, M288M, M299M, M304M, M422M, M443M, M448M, M497M, M564M, M714M
Gene Name(s): PAL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CIN
Query on CIN

B 4-CARBOXYCINNAMIC ACID
C10 H8 O4
HAEJSGLKJYIYTB-ZZXKWVIFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET
175
Query on 175
A, B L-PEPTIDE LINKING C8 H16 N4 O3 ALA , SER , GLY

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.299
  • R-Value Work: 0.243
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 107.86 α = 90.00
b = 107.86 β = 90.00
c = 204.38 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-05-06
  • Released Date: 2004-10-12
  • Deposition author(s): Calabrese, J.C., Jordan, D.B.

Revision History

  • Version 1_0: 2004-10-12

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Version format compliance

  • Version 1_3: 2011-11-16

    Type: Atomic model

  • Version 1_4: 2017-10-11

    Type: Refinement description