Download MendeleyThe Crystal Structure of APC1116 from Bacillus subtilis
Kim, Y., Lezondra, L., Joachimiak, A.To be published.
1S5A
Crystal Structure of Putative Isomerase from Bacillus subtilis
- PDB DOI: https://doi.org/10.2210/pdb1S5A/pdb
- Classification: Structural Genomics, Unknown function
- Organism(s): Bacillus subtilis
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2004-01-20 Released: 2004-05-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.236
- R-Value Work: 0.199
- R-Value Observed: 0.199
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical protein yesE | 150 | Bacillus subtilis | Mutation(s): 5 Gene Names: YESE, BSU06870 |  | |
UniProt | |||||
Find proteins for O31511 (Bacillus subtilis (strain 168)) Explore O31511 Go to UniProtKB: O31511 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O31511 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | F [auth A] G [auth A] I [auth B] K [auth C] L [auth C] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | E [auth A], H [auth B], J [auth C], M [auth D] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.236
- R-Value Work: 0.199
- R-Value Observed: 0.199
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 43.613 | α = 102.47 |
| b = 55.725 | β = 99.98 |
| c = 72.405 | γ = 106.51 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| SBC-Collect | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2004-05-11 Deposition Author(s): Kim, Y., Lezondra, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2004-05-11
Type: Initial release - Version 1.1: 2008-04-29
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance
