1RBL

STRUCTURE DETERMINATION AND REFINEMENT OF RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE(SLASH)OXYGENASE FROM SYNECHOCOCCUS PCC6301


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Observed: 0.200

Literature

Macromolecules
Sequence Display for 1RBL

Classification: LYASE

Total Structure Weight: 521799.41

Macromolecule Entities
Molecule Chains Length Organism Details
RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN) A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 467 Synechococcus elongatus EC#: 4.1.1.39 IUBMB
Mutation: P41R, V42F, Q91A, R356A
Gene Name(s): cbbL rbcA rbcL syc0130_c
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (SMALL CHAIN) I, J, K..., L, M, N, O, PI, J, K, L, M, N, O, P 109 Synechococcus elongatus EC#: 4.1.1.39 IUBMB
Mutation: D76A, K78A, S79A, Q109E, V113S
Gene Name(s): cbbS rbcS syc0129_c
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CAP
Query on CAP

A, B, C, D, E, F, G, H 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
C6 H14 O13 P2
ITHCSGCUQDMYAI-ZMIZWQJLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FMT
Query on FMT

A, B, C, D, E, F, G, H FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, E, F, G, H MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Observed: 0.200
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 223.90 α = 90.00
b = 111.90 β = 90.00
c = 199.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1993-05-12
  • Released Date: 1994-06-22
  • Deposition author(s): Newman, J., Gutteridge, S., Branden, C.-I., Jones, T.A.

Revision History

  • Version 1_0: 1994-06-22

    Type: Initial release

  • Version 1_1: 2008-03-10

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Source and taxonomy, Version format compliance