Crystal structure of Escherichia coli GadB (neutral pH)
1PMO
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Lyase
    Structure Weight: 319968.55
    Molecule: Glutamate decarboxylase beta
    Polymer: 1 Type: protein Length: 466
    Chains: A, B, C, D, E, F
    EC#: 4.1.1.15   
    Fragment: GadB
    Organism: Escherichia coli
    Gene Names: gadB b1493 JW1488
    UniProtKB: Protein Feature View | Search PDB | P69910  
     
  •   Structure Validation Hide

    View the full validation report  

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Escherichia coli   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1PMM   The same protein at low pH 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    PLR
    Search 
    Download 
    PLR C8 H12 N O5 P
    (5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE
    PLR:1PMO
    TRS
    Search 
    Download 
    TRS C4 H12 N O3
    2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
    TRS:1PMO
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Capitani, G.,  De Biase, D.,  Aurizi, C.,  Gut, H.,  Bossa, F.,  Grutter, M.G.

    Deposition:   2003-06-11
    Release:   2004-02-17
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.30
    R-Value: 0.200 (work)
    R-Free: 0.233
    Space Group: P 32
    Unit Cell:
      Length [Å] Angles [°]
    a = 116.00 α = 90.00 
    b = 116.00 β = 90.00 
    c = 207.35 γ = 120.00