1PMO

Crystal structure of Escherichia coli GadB (neutral pH)

Structural Biology Knowledgebase: 1PMO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.200

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1PMO

Classification: LYASE

Total Structure Weight: 319968.55

Macromolecule Entities
Molecule Chains Length Organism Details
Glutamate decarboxylase beta A, B, C..., D, E, FA, B, C, D, E, F 466 Escherichia coli EC#: 4.1.1.15 IUBMB
Fragment: GadB
Gene Name(s): gadB b1493 JW1488

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLR
Query on PLR

A, B, C, D, E, F (5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE
4'-DEOXYPYRIDOXINE PHOSPHATE (Synonym)
C8 H12 N O5 P
RBCOYOYDYNXAFA-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
TRS
Query on TRS

A, B, C, D, E, F 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.200
  • Space Group: P 32
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 116.00 α = 90.00
b = 116.00 β = 90.00
c = 207.35 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-11
  • Released Date: 2004-02-17
  • Deposition author(s): Capitani, G., De Biase, D., Aurizi, C., Gut, H., Bossa, F., Grutter, M.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4