1N94

Aryl Tetrahydropyridine Inhbitors of Farnesyltransferase: Glycine, Phenylalanine and Histidine Derivates


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.50 Å
  • R-Value Free: 0.296 
  • R-Value Work: 0.295 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Aryl tetrahydropyridine inhibitors of farnesyltransferase: glycine, phenylalanine and histidine derivatives.

Gwaltney II, S.L.O'Connor, S.J.Nelson, L.T.Sullivan, G.M.Imade, H.Wang, W.Hasvold, L.Li, Q.Cohen, J.Gu, W.Z.Tahir, S.K.Bauch, J.Marsh, K.Ng, S.C.Frost, D.J.Zhang, H.Muchmore, S.Jakob, C.G.Stoll, V.Hutchins, C.Rosenberg, S.H.Sham, H.L.

(2003) Bioorg Med Chem Lett 13: 1359-1362

  • DOI: https://doi.org/10.1016/s0960-894x(03)00095-7
  • Primary Citation of Related Structures:  
    1N94, 1N95

  • PubMed Abstract: 

    Inhibitors of farnesyltransferase are effective against a variety of tumors in mouse models of cancer. Clinical trials to evaluate these agents in humans are ongoing. In our effort to develop new farnesyltransferase inhibitors, we have discovered a series of aryl tetrahydropyridines that incorporate substituted glycine, phenylalanine and histidine residues. The design, synthesis, SAR and biological properties of these compounds will be discussed.


  • Organizational Affiliation

    Pharmaceutical Discovery, R47B, Building AP-10, Abbott Laboratories, Abbott Park, IL 60064-6101, USA. stephen.gwaltney@syrrx.com


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein farnesyltransferase alpha subunit315Rattus norvegicusMutation(s): 0 
EC: 2.5.1
UniProt
Find proteins for Q04631 (Rattus norvegicus)
Explore Q04631 
Go to UniProtKB:  Q04631
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ04631
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Protein farnesyltransferase beta subunit397Rattus norvegicusMutation(s): 0 
EC: 2.5.1
UniProt
Find proteins for Q02293 (Rattus norvegicus)
Explore Q02293 
Go to UniProtKB:  Q02293
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ02293
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
TIN
Query on TIN

Download Ideal Coordinates CCD File 
D [auth A]2-{(5-{[BUTYL-(2-CYCLOHEXYL-ETHYL)-AMINO]-METHYL}-2'-METHYL-BIPHENYL-2-CARBONYL)-AMINO]-4-METHYLSULFANYL-BUTYRIC ACID
C32 H46 N2 O3 S
GAQHYZNOMLXSEA-PMERELPUSA-N
HFP
Query on HFP

Download Ideal Coordinates CCD File 
C [auth A]ALPHA-HYDROXYFARNESYLPHOSPHONIC ACID
C15 H33 O4 P
IJNCEETVCWDDQB-KFWWJZLASA-N
ZN
Query on ZN

Download Ideal Coordinates CCD File 
E [auth B]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Binding Affinity Annotations 
IDSourceBinding Affinity
TIN PDBBind:  1N94 IC50: 1.1 (nM) from 1 assay(s)
BindingDB:  1N94 IC50: min: 1, max: 1.1 (nM) from 3 assay(s)
EC50: min: 16, max: 16 (nM) from 2 assay(s)
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.50 Å
  • R-Value Free: 0.296 
  • R-Value Work: 0.295 
  • Space Group: P 61
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 172.106α = 90
b = 172.106β = 90
c = 69.404γ = 120
Software Package:
Software NamePurpose
MAR345data collection
SCALEPACKdata scaling
X-PLORmodel building
X-PLORrefinement
X-PLORphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2003-01-07
    Type: Initial release
  • Version 1.1: 2008-04-28
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-10-11
    Changes: Refinement description