1MD4

A folding mutant of human class pi glutathione transferase, created by mutating glycine 146 of the wild-type protein to valine

Structural Biology Knowledgebase: 1MD4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.207

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1MD4

Classification: TRANSFERASE

Total Structure Weight: 47582.74

Macromolecule Entities
Molecule Chains Length Organism Details
pi glutathione transferase A, B 209 Homo sapiens EC#: 2.5.1.18 IUBMB
Mutation: G145V
Gene Name(s): GSTP1 Gene View FAEES3 GST3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GSH
Query on GSH

A, B GLUTATHIONE
C10 H17 N3 O6 S
RWSXRVCMGQZWBV-WDSKDSINSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MES
Query on MES

A, B 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.207
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 77.27 α = 90.00
b = 89.44 β = 98.07
c = 68.92 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-08-06
  • Released Date: 2002-08-21
  • Deposition author(s): Kong, G.K.-W., Dragani, B., Aceto, A., Cocco, R., Mannervik, B., Stenberg, G., McKinstry, W.J., Polekhina, G., Parker, M.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4