1KG0

Structure of the Epstein-Barr Virus gp42 Protein Bound to the MHC class II Receptor HLA-DR1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.221

Literature

Macromolecules
Sequence Display for 1KG0

Classification: Viral protein / Immune system

Total Structure Weight: 59960.66

Macromolecule Entities
Molecule Chains Length Organism Details
MHC class II Receptor HLA-DR1 A 180 Homo sapiens Fragment: ALPHA CHAIN, EXTRACELLULAR DOMAIN
Gene Name(s): HLA-DRA Gene View HLA-DRA1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
MHC class II Receptor HLA-DR1 B 188 Homo sapiens Fragment: BETA CHAIN, EXTRACELLULAR DOMAIN
Gene Name(s): HLA-DRB1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Hemagglutinin HA Peptide D 13 Synthetic construct Fragment: Antigenic Peptide
Gene Name(s): HA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
gp42 Protein C 136 Human gammaherpesvirus 4 Fragment: Extracellular Domain
Gene Name(s): BZLF2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.221
  • Space Group: P 63 2 2

Unit Cell:

Length (Å) Angle (°)
a = 170.40 α = 90.00
b = 170.40 β = 90.00
c = 101.00 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-11-25
  • Released Date: 2002-03-27
  • Deposition author(s): Mullen, M.M., Haan, K.M., Longnecker, R., Jardetzky, T.S.

Revision History

  • Version 1_0: 2002-03-27

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2016-11-23

    Type: Structure summary