1KBP
KIDNEY BEAN PURPLE ACID PHOSPHATASE
- PDB DOI: https://doi.org/10.2210/pdb1KBP/pdb
- Classification: HYDROLASE (PHOSPHORIC MONOESTER)
- Organism(s): Phaseolus vulgaris
- Mutation(s): No 
- Deposited: 1995-02-20 Released: 1996-10-14 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.65 Å
- R-Value Free: 0.233 
- R-Value Work: 0.195 
- R-Value Observed: 0.195 
wwPDB Validation   3D Report Full Report
This is version 1.3 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
PURPLE ACID PHOSPHATASE | 432 | Phaseolus vulgaris | Mutation(s): 0  EC: 3.1.3.2 | ||
UniProt | |||||
Find proteins for P80366 (Phaseolus vulgaris) Explore P80366  Go to UniProtKB:  P80366 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P80366 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | AA [auth D] BA [auth D] CA [auth D] DA [auth D] E [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
ZN Query on ZN | FA [auth D], K [auth A], R [auth B], Y [auth C] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
FE Query on FE | EA [auth D], J [auth A], Q [auth B], X [auth C] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.65 Å
- R-Value Free: 0.233 
- R-Value Work: 0.195 
- R-Value Observed: 0.195 
- Space Group: C 2 2 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 132.7 | α = 90 |
b = 347.3 | β = 90 |
c = 128.7 | γ = 90 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
X-PLOR | model building |
X-PLOR | refinement |
X-PLOR | phasing |
Entry History 
Deposition Data
- Released Date: 1996-10-14  Deposition Author(s): Klabunde, T., Strater, N., Krebs, B.
Revision History (Full details and data files)
- Version 1.0: 1996-10-14
Type: Initial release - Version 1.1: 2008-03-03
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations, Structure summary