1FAT
PHYTOHEMAGGLUTININ-L
- PDB DOI: https://doi.org/10.2210/pdb1FAT/pdb
- Classification: LECTIN
- Organism(s): Phaseolus vulgaris
- Mutation(s): No
- Deposited: 1996-06-12 Released: 1996-12-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.230
- R-Value Work: 0.200
- R-Value Observed: 0.200
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PHYTOHEMAGGLUTININ-L | 252 | Phaseolus vulgaris | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P05087 (Phaseolus vulgaris) Explore P05087 Go to UniProtKB: P05087 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P05087 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | E [auth A], H [auth B], K [auth C], N [auth D] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
| MN Query on MN | F [auth A], I [auth B], L [auth C], O [auth D] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |  | ||
| CA Query on CA | G [auth A], J [auth B], M [auth C], P [auth D] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.230
- R-Value Work: 0.200
- R-Value Observed: 0.200
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 106.3 | α = 90 |
| b = 121.2 | β = 93.7 |
| c = 90.8 | γ = 90 |
| Software Name | Purpose |
|---|---|
| X-PLOR | model building |
| X-PLOR | refinement |
| MADNES | data reduction |
| X-PLOR | phasing |
Entry History
Deposition Data
- Released Date: 1996-12-23 Deposition Author(s): Hamelryck, T., Loris, R.
Revision History (Full details and data files)
- Version 1.0: 1996-12-23
Type: Initial release - Version 1.1: 2008-03-03
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations, Other, Structure summary
