NMR Ensemble

1F40

SOLUTION STRUCTURE OF FKBP12 COMPLEXED WITH GPI-1046, A NEUROTROPHIC LIGAND

Structural Biology Knowledgebase: 1F40 SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50
  • Conformers Submitted: 10
  • Selection Criteria: Structures with Acceptable Covalent Geometry Structures with Favorable Non Bond Energy Structures with the Least Restraint Violations

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1F40

Classification: ISOMERASE

Total Structure Weight: 12197.06

Macromolecule Entities
Molecule Chains Length Organism Details
FK506 BINDING PROTEIN (FKBP12) A 107 Homo sapiens EC#: 5.2.1.8 IUBMB
Details: PROTEIN COORDINATES WERE TAKEN FROM THE CRYSTAL STRUCTURE BY HOLT ET AL. (1993, PDB ACCESSION CODE 1FKG).
Gene Name(s): FKBP1A Gene View FKBP1 FKBP12
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GPI
Query on GPI

A (2S)-[3-PYRIDYL-1-PROPYL]-1-[3,3-DIMETHYL- 1,2-DIOXOPENTYL]-2-PYRROLIDINECARBOXYLATE
GPI-1046 (Synonym)
C20 H28 N2 O4
OQAHHWOPVDDWHD-INIZCTEOSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
GPI IC50: 1240 nM (100) BindingDB
Ki: 0.01 - 7.5 nM (97 - 100) BindingDB

N/A in BindingMoad
Kd: 1000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50
  • Conformers Submitted: 10
  • Selection Criteria: structures with acceptable covalent geometry,structures with favorable non-bond energy,structures with the least restraint violations

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-06-07
  • Released Date: 2000-11-08
  • Deposition author(s): Sich, C., Improta, S., Cowley, D.J., Guenet, C., Merly, J.P., Teufel, M., Saudek, V.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4