1C1Y

CRYSTAL STRUCTURE OF RAP.GMPPNP IN COMPLEX WITH THE RAS-BINDING-DOMAIN OF C-RAF1 KINASE (RAFRBD).

Structural Biology Knowledgebase: 1C1Y SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.229

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1C1Y

Classification: SIGNALING PROTEIN

Total Structure Weight: 28432.73

Macromolecule Entities
Molecule Chains Length Organism Details
RAS-RELATED PROTEIN RAP-1A A 167 Homo sapiens Fragment: RAP, RESIDUES 1-167
Gene Name(s): RAP1A Gene View KREV1
PROTO-ONCOGENE SERINE/THREONINE PROTEIN KINASE RAF-1 B 77 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: RAFRBD, RESIDUES 51-131
Gene Name(s): RAF1 Gene View RAF

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
GTP
Query on GTP

A GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
Ligand Explorer
 
JSmol
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.229
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 44.17 α = 90.00
b = 71.88 β = 90.00
c = 100.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-07-22
  • Released Date: 1999-08-02
  • Deposition author(s): Nassar, N.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4