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IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI
DOI:10.2210/pdb1c04/pdb   NDB ID: RR0002
1C04
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 82721.45
    Molecule: 23S RRNA FRAGMENT
    Polymer: 1 Type: rna Length: 58
    Chains: E
    Fragment: 23S RRNA 1151-1208 REGION
    Details: RNA E. COLI SEQUENCE AND MODEL
    Organism Haloarcula marismortui
    Molecule: 23S RRNA FRAGMENT
    Polymer: 2 Type: rna Length: 29
    Chains: F
    Fragment: 23S RRNA HELIX 95
    Details: RNA RAT SEQUENCE AND MODEL
    Organism Haloarcula marismortui
    Molecule: RIBOSOMAL PROTEIN L2
    Polymer: 3 Type: protein Length: 137
    Chains: A
    Fragment: CENTRAL RNA-BINDING DOMAINS
    Details: MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1RL2
    Organism Haloarcula marismortui
    Gene Name rplB
    UniProtKB:   Protein Feature View | Search PDB | P04257  
    Molecule: RIBOSOMAL PROTEIN L6
    Polymer: 4 Type: protein Length: 177
    Chains: B
    Details: MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1RL6
    Organism Haloarcula marismortui
    Molecule: RIBOSOMAL PROTEIN L11
    Polymer: 5 Type: protein Length: 67
    Chains: C
    Fragment: C-TERMINAL DOMAIN
    Details: MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1QA6
    Organism Haloarcula marismortui
    Gene Names rpl11 rrnAC1414
    UniProtKB:   Protein Feature View | Search PDB | P14122  
    Molecule: RIBOSOMAL PROTEIN L14
    Polymer: 6 Type: protein Length: 122
    Chains: D
    Details: MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1WHI
    Organism Haloarcula marismortui
    Gene Names rpl14 rrnAC1602
    UniProtKB:   Protein Feature View | Search PDB | P22450  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Haloarcula marismortui   Taxonomy    
    Polymer: 2
    Scientific Name: Haloarcula marismortui   Taxonomy    
    Polymer: 3
    Scientific Name: Haloarcula marismortui   Taxonomy    
    Polymer: 4
    Scientific Name: Haloarcula marismortui   Taxonomy    
    Polymer: 5
    Scientific Name: Haloarcula marismortui   Taxonomy    
    Polymer: 6
    Scientific Name: Haloarcula marismortui   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1QA6  L11-RNA RIBOSOMAL PROTEIN-RNA COMPLEX 
    1RL2  RIBOSOMAL PROTEIN L2 
    1RL6  RIBOSOMAL PROTEIN L6 
    1WHI  RIBOSOMAL PROTEIN L14 
    430D  SARCIN-RICIN LOOP OF 28S RRNA 
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    MSE
    Search 
    MSE C5 H11 N O2 Se MET lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: RR0002
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Ban, N.,  Nissen, P.,  Capel, M.,  Moore, P.B.,  Steitz, T.A.

    Deposition:   1999-07-14
    Release:   1999-08-31
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   5.00
    R-Value: n/a
    R-Free: n/a
    Space Group: C 2 2 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 212.00 α = 90.00 
    b = 301.40 β = 90.00 
    c = 576.30 γ = 90.00