Structure of the D41N variant of the human mitochondrial deoxyribonucleotidase in complex with uridine 2'-monophosphate DOI:10.2210/pdb1z4j/pdb

1Z4J   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Hydrolase Structure Weight: 23305.19 Molecule: 5'(3')-deoxyribonucleotidase Polymer: 1 Type: protein Length: 197 Chains: A EC#: 3.1.3    Mutation: D41N Organism Homo sapiens Gene Names NT5M DNT2 UniProtKB:   Protein Feature View | Search PDB | Q9NPB1         Source Hide Polymer: 1 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli bl21(de3)       Related PDB Entries Hide Identifier Details 1Z4I  the same protein complexed with deoxyribouridine 5'-monophosphate  1Z4K  the same protein complexed with thymidine 3'-monophosphate  1Z4L  the same protein complexed with thymidine 5'-monophosphate  1Z4M  the same protein complexed with uridine 5'-monophosphate  1Z4P  the same protein complexed with deoxyriboguanosine 5'-monophosphate  1Z4Q  the same protein complexed with 3'-deoxy 2'3'-didehydrothymidine 5'-monophosphate (d4T-MP)      Ligand Chemical Component Hide Identifier Formula Name Interactions GOL Search  Download  C3 H8 O3 GLYCEROL   Ligand Explorer MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer U2P Search  Download  C9 H13 N2 O9 P PHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO- 2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL- TETRAHYDRO-FURAN-3-YL] ESTER   Ligand Explorer     External Domain Annotations Hide SCOP Classification v1.75: 1 Domain - data from SCOP   CATH Classification v3.4.0: 2 Domains - data from CATH   Pfam Classification: 1 Domain - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Wallden, K.,  Ruzzenente, B.,  Rinaldo-Matthis, A.,  Bianchi, V.,  Nordlund, P. Deposition:   2005-03-16 Release:   2005-07-26 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance 2011-07-13 Non-polymer description     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.80 R-Value: 0.174 (obs.) R-Free: 0.202 Space Group: P 43 21 2 Unit Cell:   Length [Å] Angles [°] a = 73.45 α = 90.00  b = 73.45 β = 90.00  c = 106.08 γ = 90.00