1YS1

Burkholderia cepacia lipase complexed with hexylphosphonic acid (R)-2-methyl-3-phenylpropyl ester


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.158
  • R-Value Work: 0.149

Literature

Macromolecules
Sequence Display for 1YS1

Classification: HYDROLASE

Total Structure Weight: 33399.08

Macromolecule Entities
Molecule Chains Length Organism Details
Lipase X 320 Burkholderia cepacia EC#: 3.1.1.3 IUBMB
Fragment: residues 45-364
Mutation: A2D, G3N, S18T, N40R, S92T, D125G, S137T, H154N, Q165K, R171Q, L218I, F221G, L232I, V240A, L243P, I256V, L266V, K276Q, Y300N
Gene Name(s): lipA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2HR
Query on 2HR

X HEXYLPHOSPHONIC ACID (R)-2-METHYL-3-PHENYLPROPYL ESTER
C16 H27 O3 P
MMTDYBZZRYOMFD-OAHLLOKOSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

X CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.158
  • R-Value Work: 0.149
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 88.85 α = 90.00
b = 46.19 β = 121.27
c = 84.63 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-02-06
  • Released Date: 2005-05-17
  • Deposition author(s): Mezzetti, A., Schrag, J.D., Cheong, C.S., Kazlauskas, R.J.

Revision History

  • Version 1_0: 2005-05-17

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance