1YRX

Structure of a novel photoreceptor: the BLUF domain of AppA from Rhodobacter sphaeroides


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.241

Literature

Macromolecules
Sequence Display for 1YRX

Classification: TRANSCRIPTION

Total Structure Weight: 43624.98

Macromolecule Entities
Molecule Chains Length Organism Details
hypothetical protein Rsph03001874 A, B, C 121 Rhodobacter sphaeroides Fragment: sequence database residues 17-133
Gene Name(s): appA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMN
Query on FMN

A, B, C FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
D9G
Query on D9G

A, C N-DODECYL-N,N-DIMETHYLGLYCINATE
C16 H33 N O2
DVEKCXOJTLDBFE-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.241
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 98.67 α = 90.00
b = 98.67 β = 90.00
c = 127.45 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-02-05
  • Released Date: 2005-06-28
  • Deposition author(s): Anderson, S., Dragnea, V., Masuda, S., Ybe, J., Moffat, K., Bauer, C.

Revision History

  • 2008-04-30
    Type: Version format compliance
  • 2011-07-13
    Type: Derived calculations, Version format compliance