1YQT

RNase-L Inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 1YQT

Classification: hydrolyase / translation

Total Structure Weight: 62200.39

Macromolecule Entities
Molecule Chains Length Organism Details
RNase l inhibitor A 538 Pyrococcus furiosus Fragment: twin cassette ATPase domain
Mutation: M100M, D205E, M383M, M500M, M516M, M525M, M541M, M543M, M547M
Gene Name(s): PF0670
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.199
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 59.68 α = 90.00
b = 74.64 β = 90.00
c = 123.69 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-02-02
  • Released Date: 2005-04-19
  • Deposition author(s): Karcher, A., Buttner, K., Martens, B., Jansen, R.P., Hopfner, K.P.

Revision History

  • Version 1_0: 2005-04-19

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-10-11

    Type: Advisory, Refinement description