Structure of the complex of Trypanosoma cruzi farnesyl disphosphate synthase with alendronate, Isopentenyl diphosphate and mg+2 DOI:10.2210/pdb1yhm/pdb

1YHM   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Biological Assembly 1 (gz) (A+S) Biological Assembly 2 (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Transferase Structure Weight: 127767.99 Molecule: farnesyl pyrophosphate synthase Polymer: 1 Type: protein Length: 362 Chains: A, B, C EC#: 2.5.1.10    Organism Trypanosoma cruzi UniProtKB:   Protein Feature View | Search PDB | Q8WS26         Source Hide Polymer: 1 Scientific Name: Trypanosoma cruzi   Taxonomy   Expression System: Escherichia coli       Related PDB Entries Hide Identifier Details 1YHK  Structure of the Trypanosoma cruzi farnesyl diphosphate synthase  1YHL  Structure of the complex of the Trypanosoma cruzi farnesyl diphosphate synthase with risedronate, dimethylallyl diphosphate and mg      Ligand Chemical Component Hide Identifier Formula Name Interactions AHD Search  Download  C4 H9 N O7 P2 4-AMINO-1-HYDROXYBUTANE-1,1-DIYLDIPHOSPHONATE   Ligand Explorer IPE Search  Download  C5 H12 O7 P2 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE   Ligand Explorer MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer SO4 Search  Download  O4 S SULFATE ION   Ligand Explorer     External Ligand Annotations Hide Identifier   Binding Affinity (Sequence Identity %) AHD Search  Download  N/A in BindingDB IC50: 147000 nM - data from BindingMOAD   IC50: 147000 nM - data from PDBbind       Modified Residues Hide Identifier Formula Parent Type MSE Search  C5 H11 N O2 Se MET lPeptideLinking     External Domain Annotations Hide CATH Classification v3.4.0: 3 Domains - data from CATH   Pfam Classification: 1 Domain - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly 1            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software)Biological assembly 2 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Gabelli, S.B.,  McLellan, J.S.,  Montalvetti, A.,  Oldfield, E.,  Docampo, R.,  Amzel, L.M. Deposition:   2005-01-09 Release:   2005-12-20 Last Modified (REVDAT):   2013-04-17     Revision History    Hide Mouse over text for details 2013-04-17 Non-polymer description 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data: N/A Resolution[Å]:   2.50 R-Value: 0.211 (obs.) R-Free: 0.278 Space Group: P 61 2 2 Unit Cell:   Length [Å] Angles [°] a = 103.21 α = 90.00  b = 103.21 β = 90.00  c = 385.24 γ = 120.00