1YEJ

CATALYTIC ANTIBODY COMPLEX


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.212

Literature

Macromolecules
Sequence Display for 1YEJ

Classification: IMMUNE SYSTEM

Total Structure Weight: 49069.26

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (IG ANTIBODY D2.3 (LIGHT CHAIN)) L 219 Mus musculus Fragment: ANTIGEN BINDING FRAGMENT
Gene Name(s): Igk
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (IG ANTIBODY D2.3 (HEAVY CHAIN)) H 222 Mus musculus Fragment: ANTIGEN BINDING FRAGMENT

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PNF
Query on PNF

L 6-{4-[HYDROXY-(4-NITRO-PHENOXY)-PHOSPHORYL]- BUTYRYLAMINO}-HEXANOIC ACID
C16 H23 N2 O8 P
WYHHVZLGTMCKOR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

L ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
PNF N/A in BindingDB
Kd: 35 nM  BindingMOAD
Kd: 35 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.212
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 78.27 α = 90.00
b = 78.27 β = 90.00
c = 158.67 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-08-13
  • Released Date: 1999-01-13
  • Deposition author(s): Gigant, B., Knossow, M.

Revision History

  • 2008-04-27
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance