Macromolecules
Sequence Display for 1YAE

Classification: MEMBRANE PROTEIN

Total Structure Weight: 214940.86

Macromolecule Entities
Molecule Chains Length Organism Details
Glutamate receptor, ionotropic kainate 2 A, B, C..., D, E, FA, B, C, D, E, F 312 Rattus norvegicus Fragment: Subunit GLUR6 Agonist Binding Domain with the transmembrane domain removed and replaced with a hydrophilic linker
Details: transmembrane domain was removed and replaced with a hydrophilic linker
Gene Name(s): Grik2 Glur6

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DOQ
Query on DOQ

A, B, C, D, E, F (2S,3S,4S)-2-CARBOXY-4-[(1Z,3E,5R)-5-CARBOXY- 1-METHYL-1,3-HEXADIENYL]-3-PYRROLIDINEACETIC ACID
3S, (Synonym)
C15 H21 N O6
VZFRNCSOCOPNDB-AOKDLOFSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B, C, D, E, F N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUC
Query on FUC

A ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.11 Å
  • R-Value Free: 0.334
  • R-Value Work: 0.275
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 246.36 α = 90.00
b = 106.57 β = 133.19
c = 172.69 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-12-17
  • Released Date: 2005-02-01
  • Deposition author(s): Nanao, M.H., Green, T., Stern-Bach, Y., Heinemann, S.F., Choe, S.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4