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Structure of the Kainate Receptor Subunit GluR6 Agonist Binding Domain Complexed with Domoic Acid
1YAE
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Membrane Protein
    Structure Weight: 214940.86
    Molecule: Glutamate receptor, ionotropic kainate 2
    Polymer: 1 Type: protein Length: 312
    Chains: A, B, C, D, E, F
    Fragment: Subunit GLUR6 Agonist Binding Domain with the transmembrane domain removed and replaced with a hydrophilic linker
    Details: transmembrane domain was removed and replaced with a hydrophilic linker
    Organism: Rattus norvegicus
    Gene Names: Grik2 Glur6
    UniProtKB: Protein Feature View | Search PDB | P42260  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Rattus norvegicus   Taxonomy   Common Name: Norway rat Expression System: Trichoplusia ni  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    DOQ
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    DOQ C15 H21 N O6
    (2S,3S,4S)-2-CARBOXY-4-[(1Z,3E,5R)-5-CARBOXY- 1-METHYL-1,3-HEXADIENYL]-3-PYRROLIDINEACETIC ACID
    DOQ:1YAE
    FUC
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    FUC C6 H12 O5
    ALPHA-L-FUCOSE
    NAG
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    NAG C8 H15 N O6
    N-ACETYL-D-GLUCOSAMINE
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Nanao, M.H.,  Green, T.,  Stern-Bach, Y.,  Heinemann, S.F.,  Choe, S.

    Deposition:   2004-12-17
    Release:   2005-02-01
    Last Modified (REVDAT):   2011-07-13
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
    2011-07-13
    Non-polymer description
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   3.11
    R-Value: 0.278 (obs.)
    R-Free: 0.334
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 246.36 α = 90.00 
    b = 106.57 β = 133.19 
    c = 172.69 γ = 90.00