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Crystal structure of the PDK3-L2 complex
1Y8N
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase
    Structure Weight: 62731.13
    Molecule: [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3
    Polymer: 1 Type: protein Length: 419
    Chains: A
    EC#: 2.7.11.2   
    Organism: Homo sapiens
    Gene Names: Gene View for PDK3 PDHK3
    UniProtKB: Protein Feature View | Search PDB | Q15120  
    Molecule: Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
    Polymer: 2 Type: protein Length: 128
    Chains: B
    EC#: 2.3.1.12   
    Organism: Homo sapiens
    Gene Names: Gene View for DLAT DLTA
    UniProtKB: Protein Feature View | Search PDB | P10515  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli bl21  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli bl21  
     
  •   Related PDB Entries Hide
    Identifier Details
    1Y8O  ADP-bound form 
    1Y8P  ATP-bound form 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    K
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    K K
    POTASSIUM ION
    RED
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    RED C8 H16 O2 S2
    DIHYDROLIPOIC ACID
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA,PQS (software)
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  •   Deposition Summary Hide
    Authors:   Kato, M.,  Chuang, J.L.,  Wynn, R.M.,  Chuang, D.T.

    Deposition:   2004-12-13
    Release:   2005-05-24
    Last Modified (REVDAT):   2011-10-05
     
  •   Revision History    Hide
    Mouse over text for details
    2011-10-05
    Non-polymer description
    2011-07-13
    Biological assembly
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.60
    R-Value: 0.211 (obs.)
    R-Free: 0.248
    Space Group: P 65 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 120.81 α = 90.00 
    b = 120.81 β = 90.00 
    c = 238.59 γ = 120.00