Dianhydrosugar-based benzamidine, factor Xa specific inhibitor in complex with bovine trypsin mutant DOI:10.2210/pdb1y5a/pdb

1Y5A   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Hydrolase Structure Weight: 24230.32 Molecule: Trypsin, cationic Polymer: 1 Type: protein Length: 223 Chains: T EC#: 3.4.21.4    Mutation: N97E, L99Y Organism Bos taurus UniProtKB:   Protein Feature View | Search PDB | P00760         Source Hide Polymer: 1 Scientific Name: Bos taurus   Taxonomy   Common Name: Bovine Expression System: Escherichia coli       Related PDB Entries Hide Identifier Details 1Y59  the same protein complexed with a related inhibitor, at 1.20A resolution  1Y5B  the same protein complexed with a related inhibitor, at 1.65A resolution  1Y5U  the same protein complexed with a related inhibitor, at 1.60A resolution      Ligand Chemical Component Hide Identifier Formula Name Interactions CA Search  Download  Ca CALCIUM ION   Ligand Explorer GOL Search  Download  C3 H8 O3 GLYCEROL   Ligand Explorer IMD Search  Download  C3 H5 N2 IMIDAZOLE   Ligand Explorer SO4 Search  Download  O4 S SULFATE ION   Ligand Explorer TL2 Search  Download  C20 H22 N4 O4 2-O-{4-[AMINO(IMINO)METHYL]PHENYL}-5-O-{3- [AMINO(IMINO)METHYL]PHENYL}-1,4:3,6-DIANHYDRO- D-GLUCITOL   Ligand Explorer     External Ligand Annotations Hide Identifier   Binding Affinity (Sequence Identity %) TL2 Search  Download  N/A in BindingDB Ki: 1330 nM - data from BindingMOAD   N/A in PDBbind     External Domain Annotations Hide CATH Classification v3.4.0: 2 Domains - data from CATH   Pfam Classification: 1 Domain - data from Pfam   GO Terms: 9 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Di Fenza, A.,  Heine, A.,  Klebe, G. Deposition:   2004-12-02 Release:   2005-12-13 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance 2011-07-13 Non-polymer description     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.40 R-Value: 0.163 (obs.) R-Free: 0.211 Space Group: P 31 2 1 Unit Cell:   Length [Å] Angles [°] a = 54.78 α = 90.00  b = 54.78 β = 90.00  c = 108.58 γ = 120.00      Molecule of the Month Hide Thrombin Trypsin Serpins Tissue Factor Fibrin