1XMZ

Crystal structure of the dark state of kindling fluorescent protein kfp from anemonia sulcata


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.38 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.139

Literature

Macromolecules
Sequence Display for 1XMZ

Classification: LUMINESCENT PROTEIN

Total Structure Weight: 54932.70

Macromolecule Entities
Molecule Chains Length Organism Details
GFP-like chromoprotein FP595 A, B 243 Anemonia sulcata Mutation: M65X, Y65X, G65X, A48G
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BME
Query on BME

A, B BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NH2
Query on NH2

A, B AMINO GROUP
H2 N
QGZKDVFQNNGYKY-UHFFFAOYAF
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CRK
Query on CRK
A, B L-PEPTIDE LINKING C16 H15 N2 O4 S MET , TYR , GLY

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.38 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.139
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 76.52 α = 90.00
b = 125.40 β = 90.00
c = 92.75 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-10-04
  • Released Date: 2005-04-19
  • Deposition author(s): Quillin, M.L., Anstrom, D.M., Shu, X., O'Leary, S., Kallio, K., Chudakov, D.M., Remington, S.J.

Revision History

  • Version 1_0: 2005-04-19

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Version format compliance