1WDU

Endonuclease domain of TRAS1, a telomere-specific non-LTR retrotransposon


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.225

Literature

Macromolecules
Sequence Display for 1WDU

Classification: RNA BINDING PROTEIN

Total Structure Weight: 55178.44

Macromolecule Entities
Molecule Chains Length Organism Details
TRAS1 ORF2p A, B 245 Bombyx mori Fragment: N-terminal domain
Mutation: C167S
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.225
  • Space Group: P 32

Unit Cell:

Length (Å) Angle (°)
a = 64.64 α = 90.00
b = 64.64 β = 90.00
c = 117.32 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-05-17
  • Released Date: 2004-08-10
  • Deposition author(s): Maita, N., Anzai, T., Aoyagi, H., Mizuno, H., Fujiwara, H.

Revision History

  • 2008-04-30
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance