1W0X

Crystal structure of human CDK2 in complex with the inhibitor olomoucine.

Structural Biology Knowledgebase: 1W0X SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.190

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1W0X

Classification: TRANSFERASE

Total Structure Weight: 34275.15

Macromolecule Entities
Molecule Chains Length Organism Details
CYCLIN-DEPENDENT KINASE 2 C 298 Homo sapiens EC#: 2.7.11.22 IUBMB
Details: INHIBITOR BOUND IN POCKET BETWEEN 2 DOMAINS
Gene Name(s): CDK2 Gene View CDKN2

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OLO
Query on OLO

C OLOMOUCINE
C15 H18 N6 O
GTVPOLSIJWJJNY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
OLO IC50: 7 - 7000 nM (100) BindingDB

N/A in BindingMoad
IC50: 5000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.190
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 73.77 α = 90.00
b = 72.55 β = 90.00
c = 54.06 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-06-14
  • Released Date: 2005-01-14
  • Deposition author(s): Schulze-Gahmen, U., Meijer, L., Kim, S.-H.

Revision History

  • 2014-02-05
    Type: Version format compliance | Details: REMARK 4
  • 2014-02-05
    Type: Source and taxonomy | Details: SOURCE
  • 2014-02-05
    Type: Other | Details: REMARK 525,REMARK 280
  • 2014-02-05
    Type: Non-polymer description | Details: FORMUL
  • 2014-02-05
    Type: Geometry validation | Details: REMARK 500
  • 2014-02-05
    Type: Citation | Details: JRNL,REMARK 1
  • 2014-02-05
    Type: Entry title | Details: TITLE
  • 2014-02-05
    Type: Biological assembly | Details: REMARK 300,REMARK 350