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Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y. This file contains the 50s subunit of one 70s ribosome. The entire crystal structure contains five 70s ribosomes and is described in remark 400.
DOI:10.2210/pdb1vp0/pdb   NDB ID: RR0094
1VP0
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
1VOQ   1VOR   1VOS   1VOU   1VOV   1VOW   1VOX   1VOY   1VOZ   1VP0  
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Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 1351264.79
    Molecule: 23S RIBOSOMAL RNA
    Polymer: 1 Type: rna Length: 2825
    Chains: B
    Organism Escherichia coli
    Molecule: 5S RIBOSOMAL RNA
    Polymer: 2 Type: rna Length: 119
    Chains: A
    Organism Escherichia coli
    Molecule: 50S ribosomal protein L2
    Polymer: 3 Type: protein Length: 270
    Chains: D
    Organism Escherichia coli
    Molecule: 50S ribosomal protein L3
    Polymer: 4 Type: protein Length: 205
    Chains: E
    Organism Escherichia coli
    Molecule: 50S ribosomal protein L4
    Polymer: 5 Type: protein Length: 198
    Chains: F
    Organism Escherichia coli
    Molecule: 50S ribosomal protein L5
    Polymer: 6 Type: protein Length: 178
    Chains: G
    Organism Escherichia coli
    Molecule: 50S ribosomal protein L6
    Polymer: 7 Type: protein Length: 177
    Chains: H
    Organism Escherichia coli
    Molecule: 50S ribosomal protein L9
    Polymer: 8 Type: protein Length: 52
    Chains: I
    Organism Escherichia coli
    Molecule: 50S ribosomal protein L11
    Polymer: 9 Type: protein Length: 143
    Chains: J
    Organism Escherichia coli
    Molecule: 50S ribosomal protein L13
    Polymer: 10 Type: protein Length: 143
    Chains: K
    Organism Escherichia coli
    Molecule: 50S ribosomal protein L14
    Polymer: 11 Type: protein Length: 132
    Chains: L
    Organism Escherichia coli
    Molecule: 50S ribosomal protein L15
    Polymer: 12 Type: protein Length: 141
    Chains: M
    Organism Escherichia coli
    Molecule: 50S ribosomal protein L16
    Polymer: 13 Type: protein Length: 124
    Chains: N
    Organism Escherichia coli
    Molecule: 50S ribosomal protein L17
    Polymer: 14 Type: protein Length: 114
    Chains: O
    Organism Escherichia coli
    Molecule: 50S ribosomal protein L18
    Polymer: 15 Type: protein Length: 111
    Chains: P
    Organism Escherichia coli
    Molecule: 50S ribosomal protein L19
    Polymer: 16 Type: protein Length: 125
    Chains: Q
    Organism Escherichia coli
    Molecule: 50S ribosomal protein L20
    Polymer: 17 Type: protein Length: 117
    Chains: R
    Organism Escherichia coli
    Molecule: 50S ribosomal protein L21
    Polymer: 18 Type: protein Length: 100
    Chains: S
    Organism Escherichia coli
    Gene Names rplU DR_0086
    UniProtKB:   Protein Feature View | Search PDB | Q9RY64  
    Molecule: 50S ribosomal protein L22
    Polymer: 19 Type: protein Length: 130
    Chains: T
    Organism Escherichia coli
    Molecule: 50S ribosomal protein L23
    Polymer: 20 Type: protein Length: 93
    Chains: U
    Organism Escherichia coli
    Gene Names rplW DR_0313
    UniProtKB:   Protein Feature View | Search PDB | Q9RXK0  
    Molecule: 50S ribosomal protein L24
    Polymer: 21 Type: protein Length: 113
    Chains: V
    Organism Escherichia coli
    Molecule: general stress protein Ctc
    Polymer: 22 Type: protein Length: 173
    Chains: W
    Organism Escherichia coli
    Molecule: 50S ribosomal protein L27
    Polymer: 23 Type: protein Length: 86
    Chains: X
    Organism Escherichia coli
    Molecule: 50S ribosomal protein L29
    Polymer: 24 Type: protein Length: 65
    Chains: Y
    Organism Escherichia coli
    Gene Names rpmC DR_0319
    UniProtKB:   Protein Feature View | Search PDB | Q9RXJ4  
    Molecule: 50S ribosomal protein L30
    Polymer: 25 Type: protein Length: 55
    Chains: Z
    Organism Escherichia coli
    Gene Names rpmD DR_2114
    UniProtKB:   Protein Feature View | Search PDB | Q9RSL0  
    Molecule: 50S ribosomal protein L31
    Polymer: 26 Type: protein Length: 73
    Chains: 1
    Organism Escherichia coli
    Gene Names rpmE DR_0825
    UniProtKB:   Protein Feature View | Search PDB | Q9RW44  
    Molecule: 50S ribosomal protein L32
    Polymer: 27 Type: protein Length: 58
    Chains: 2
    Organism Escherichia coli
    Gene Names rpmF DR_2366
    UniProtKB:   Protein Feature View | Search PDB | P49228  
    Molecule: 50S ribosomal protein L33
    Polymer: 28 Type: protein Length: 53
    Chains: 3
    Organism Escherichia coli
    Molecule: 50S ribosomal protein L34
    Polymer: 29 Type: protein Length: 46
    Chains: 4
    Organism Escherichia coli
    Molecule: 50S ribosomal protein L35
    Polymer: 30 Type: protein Length: 63
    Chains: 5
    Organism Escherichia coli
    Molecule: 50S ribosomal protein L36
    Polymer: 31 Type: protein Length: 35
    Chains: 6
    Organism Escherichia coli
    Gene Names rpmJ DR_2124
    UniProtKB:   Protein Feature View | Search PDB | Q9RSK0  
    Molecule: 50S ribosomal protein L1P
    Polymer: 32 Type: protein Length: 217
    Chains: 7
    Organism Escherichia coli
     
  •   Structure Validation Hide

    Download full validation report    

     
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 2
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 3
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 4
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 5
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 6
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 7
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 8
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 9
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 10
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 11
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 12
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 13
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 14
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 15
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 16
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 17
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 18
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 19
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 20
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 21
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 22
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 23
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 24
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 25
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 26
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 27
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 28
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 29
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 30
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 31
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 32
    Scientific Name: Escherichia coli   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1VOQ  30s subunit of 70s ribosome one 
    1VOR  50s subunit of 70s ribosome one 
    1VOS  30s subunit of 70s ribosome two 
    1VOU  50s subunit of 70s ribosome two 
    1VOV  30s subunit of 70s ribosome three 
    1VOW  50s subunit of 70s ribosome three 
    1VOX  30s subunit of 70s ribosome four 
    1VOY  50s subunit of 70s ribosome four 
    1VOZ  30s subunit of 70s ribosome five 
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    MSE
    Search 
    MSE C5 H11 N O2 Se MET lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: RR0094
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Composite of PDB entries (1VOQ and 1VOR)