Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y. This file contains the 30s subunit of one 70s ribosome. The entire crystal structure contains five 70s ribosomes and is described in remark 400. DOI:10.2210/pdb1vov/pdb   NDB ID: RR0089

1VOV   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Split Entry The asymmetric unit for this structure is composed of multiple PDB entries: 1VOQ   1VOR   1VOS   1VOU   1VOV   1VOW   1VOX   1VOY   1VOZ   1VP0     Download All Files      Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Ribosome Structure Weight: 776293.04 Molecule: 16S ribosomal RNA Polymer: 1 Type: rna Length: 1526 Chains: A Organism Escherichia coli Molecule: 30S ribosomal protein S2 Polymer: 2 Type: protein Length: 234 Chains: B Organism Escherichia coli Molecule: 30S ribosomal protein S3 Polymer: 3 Type: protein Length: 206 Chains: C Organism Escherichia coli Molecule: 30S ribosomal protein S4 Polymer: 4 Type: protein Length: 208 Chains: D Organism Escherichia coli Molecule: 30S ribosomal protein S5 Polymer: 5 Type: protein Length: 150 Chains: E Organism Escherichia coli Molecule: 30S ribosomal protein S6 Polymer: 6 Type: protein Length: 101 Chains: F Organism Escherichia coli Molecule: 30S ribosomal protein S7 Polymer: 7 Type: protein Length: 155 Chains: G Organism Escherichia coli Molecule: 30S ribosomal protein S8 Polymer: 8 Type: protein Length: 138 Chains: H Organism Escherichia coli Gene Names rpsH TTHA1678 UniProtKB:   Protein Feature View | Search PDB | Q5SHQ2     Molecule: 30S ribosomal protein S9 Polymer: 9 Type: protein Length: 127 Chains: I Organism Escherichia coli Molecule: 30S ribosomal protein S10 Polymer: 10 Type: protein Length: 98 Chains: J Organism Escherichia coli Molecule: 30S ribosomal protein S11 Polymer: 11 Type: protein Length: 119 Chains: K Organism Escherichia coli Molecule: 30S ribosomal protein S12 Polymer: 12 Type: protein Length: 124 Chains: L Organism Escherichia coli Molecule: 30S ribosomal protein S13 Polymer: 13 Type: protein Length: 125 Chains: M Organism Escherichia coli Molecule: 30S ribosomal protein S14 Polymer: 14 Type: protein Length: 60 Chains: N Organism Escherichia coli Molecule: 30S ribosomal protein S15 Polymer: 15 Type: protein Length: 88 Chains: O Organism Escherichia coli Molecule: 30S ribosomal protein S16 Polymer: 16 Type: protein Length: 83 Chains: P Organism Escherichia coli Molecule: 30S ribosomal protein S17 Polymer: 17 Type: protein Length: 104 Chains: Q Organism Escherichia coli Molecule: 30S ribosomal protein S18 Polymer: 18 Type: protein Length: 73 Chains: R Organism Escherichia coli Molecule: 30S ribosomal protein S19 Polymer: 19 Type: protein Length: 80 Chains: S Organism Escherichia coli Gene Names rpsS rps19 TT_C1324 UniProtKB:   Protein Feature View | Search PDB | P62660     Molecule: 30S ribosomal protein S20 Polymer: 20 Type: protein Length: 99 Chains: T Organism Escherichia coli Molecule: protein Y Polymer: 21 Type: protein Length: 90 Chains: a Organism Escherichia coli Gene Names raiA yfiA b2597 JW2578 UniProtKB:   Protein Feature View | Search PDB | P0AD49         Source Hide Polymer: 1 Scientific Name: Escherichia coli   Taxonomy     Polymer: 2 Scientific Name: Escherichia coli   Taxonomy     Polymer: 3 Scientific Name: Escherichia coli   Taxonomy     Polymer: 4 Scientific Name: Escherichia coli   Taxonomy     Polymer: 5 Scientific Name: Escherichia coli   Taxonomy     Polymer: 6 Scientific Name: Escherichia coli   Taxonomy     Polymer: 7 Scientific Name: Escherichia coli   Taxonomy     Polymer: 8 Scientific Name: Escherichia coli   Taxonomy     Polymer: 9 Scientific Name: Escherichia coli   Taxonomy     Polymer: 10 Scientific Name: Escherichia coli   Taxonomy     Polymer: 11 Scientific Name: Escherichia coli   Taxonomy     Polymer: 12 Scientific Name: Escherichia coli   Taxonomy     Polymer: 13 Scientific Name: Escherichia coli   Taxonomy     Polymer: 14 Scientific Name: Escherichia coli   Taxonomy     Polymer: 15 Scientific Name: Escherichia coli   Taxonomy     Polymer: 16 Scientific Name: Escherichia coli   Taxonomy     Polymer: 17 Scientific Name: Escherichia coli   Taxonomy     Polymer: 18 Scientific Name: Escherichia coli   Taxonomy     Polymer: 19 Scientific Name: Escherichia coli   Taxonomy     Polymer: 20 Scientific Name: Escherichia coli   Taxonomy     Polymer: 21 Scientific Name: Escherichia coli   Taxonomy         Related PDB Entries Hide Identifier Details 1VOQ  30s subunit of 70s ribosome one  1VOR  50s subunit of 70s ribosome one  1VOS  30s subunit of 70s ribosome two  1VOU  50s subunit of 70s ribosome two  1VOW  50s subunit of 70s ribosome three  1VOX  30s subunit of 70s ribosome four  1VOY  50s subunit of 70s ribosome four  1VOZ  30s subunit of 70s ribosome five  1VP0  50s subunit of 70s ribosome five      External Domain Annotations Hide SCOP Classification v1.75: 20 Domains - data from SCOP   Pfam Classification: 23 Domains - data from Pfam   GO Terms: 22 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: RR0089     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Composite of PDB entries (1VOQ and 1VOR)         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Vila-Sanjurjo, A.,  Schuwirth, B.S.,  Hau, C.W.,  Cate, J.H. Deposition:   2004-10-06 Release:   2004-11-16 Last Modified (REVDAT):   2009-02-24     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors Resolution[Å]:   11.50 R-Value: 0.395 (obs.) R-Free: 0.401 Space Group: I 4 2 2 Unit Cell:   Length [Å] Angles [°] a = 687.90 α = 90.00  b = 687.90 β = 90.00  c = 1933.30 γ = 90.00      Molecule of the Month Hide Ribosomal Subunits Ribosome Aminoglycoside Antibiotics Transfer-Messenger RNA