1UX9

Mapping protein matrix cavities in human cytoglobin through Xe atom binding: a crystallographic investigation


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.192

Literature

Macromolecules
Sequence Display for 1UX9

Classification: OXYGEN TRANSPORT

Total Structure Weight: 45378.89

Macromolecule Entities
Molecule Chains Length Organism Details
CYTOGLOBIN A, B 190 Homo sapiens Mutation: C38S, C83S
Gene Name(s): CYGB Gene View STAP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FC6
Query on FC6

A, B HEXACYANOFERRATE(3-)
FERRI(III)HEXACYANIDE (Synonym)
C6 Fe N6
HCMVSLMENOCDCK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
XE
Query on XE

A, B XENON
Xe
FHNFHKCVQCLJFQ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.192
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 47.84 α = 90.00
b = 70.52 β = 90.00
c = 98.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-02-23
  • Released Date: 2004-06-01
  • Deposition author(s): De Sanctis, D., Dewilde, S., Pesce, A., Moens, L., Ascenzi, P., Hankeln, T., Burmester, T., Bolognesi, M.

Revision History

  • Version 1_0: 2004-06-01

    Type: Initial release

  • Version 1_1: 2011-05-07

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance