1TGY
Structure of E. coli Uridine Phosphorylase complexed with uracil and ribose 1-phosphate
- PDB DOI: https://doi.org/10.2210/pdb1TGY/pdb
- Classification: TRANSFERASE
- Organism(s): Escherichia coli
- Expression System: Escherichia coli K-12
- Mutation(s): No 
- Deposited: 2004-05-31 Released: 2005-06-14 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.211 
- R-Value Work: 0.160 
- R-Value Observed: 0.160 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
uridine phosphorylase | 256 | Escherichia coli | Mutation(s): 0  Gene Names: UDP, B3831 EC: 2.4.2.3 | ||
UniProt | |||||
Find proteins for P12758 (Escherichia coli (strain K12)) Explore P12758  Go to UniProtKB:  P12758 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P12758 | ||||
Sequence AnnotationsExpand | |||||
|
Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
R1P Query on R1P | C [auth A], F [auth B] | 1-O-phosphono-alpha-D-ribofuranose C5 H11 O8 P YXJDFQJKERBOBM-TXICZTDVSA-N | |||
URA Query on URA | E [auth A], G [auth B] | URACIL C4 H4 N2 O2 ISAKRJDGNUQOIC-UHFFFAOYSA-N | |||
K Query on K | D [auth A] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.211 
- R-Value Work: 0.160 
- R-Value Observed: 0.160 
- Space Group: H 3
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 149.972 | α = 90 |
b = 149.972 | β = 90 |
c = 49.566 | γ = 120 |
Software Name | Purpose |
---|---|
MOSFLM | data reduction |
SCALEPACK | data scaling |
CNS | refinement |
CNS | phasing |
Entry History 
Deposition Data
- Released Date: 2005-06-14  Deposition Author(s): Bu, W., Settembre, E.C., Sanders, J.M., Begley, T.P., Ealick, S.E.
Revision History (Full details and data files)
- Version 1.0: 2005-06-14
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Database references, Derived calculations, Structure summary - Version 2.1: 2024-02-14
Changes: Data collection, Database references, Structure summary