2.5A Crystal Structure of the Antithrombin-Thrombin-Heparin Ternary Complex DOI:10.2210/pdb1tb6/pdb

1TB6   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Hydrolase/blood Clotting Structure Weight: 92152.72 Molecule: thrombin Polymer: 1 Type: protein Length: 49 Chains: L EC#: 3.4.21.5    Fragment: thrombin light chain Mutation: S195A Organism Homo sapiens Gene Name F2 UniProtKB:   Protein Feature View | Search PDB | P00734     Molecule: thrombin Polymer: 2 Type: protein Length: 259 Chains: H EC#: 3.4.21.5    Fragment: thrombin heavy chain, serine protease Organism Homo sapiens Gene Name F2 UniProtKB:   Protein Feature View | Search PDB | P00734   Molecule: Antithrombin-III Polymer: 3 Type: protein Length: 432 Chains: I Mutation: S137A,V317C,T401C Organism Homo sapiens Gene Names SERPINC1 AT3 PRO0309 UniProtKB:   Protein Feature View | Search PDB | P01008         Source Hide Polymer: 1 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Cricetulus griseus   Polymer: 2 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Cricetulus griseus   Polymer: 3 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Cricetulus griseus   Polymer: 4 Scientific Name: Synthetic construct   Taxonomy     Polymer: 6 Scientific Name: Synthetic construct   Taxonomy     Polymer: 8 Scientific Name: Synthetic construct   Taxonomy     Polymer: 9 Scientific Name: Synthetic construct   Taxonomy         Ligand Chemical Component Hide Identifier Formula Name Interactions BMA Search  Download  C6 H12 O6 BETA-D-MANNOSE   Ligand Explorer FUC Search  Download  C6 H12 O5 ALPHA-L-FUCOSE   Ligand Explorer GU0 Search  Download  C6 H9 O15 S3 2,3,6-TRI-O-SULFONATO-ALPHA-L-GALACTOPYRANOSE   Ligand Explorer GU1 Search  Download  C8 H14 O7 2,3-DI-O-METHYL-BETA-D-GLUCOPYRANURONIC ACID   Ligand Explorer GU2 Search  Download  C8 H14 O7 2,3-DI-O-METHYL-ALPHA-L-IDOPYRANURONIC ACID   Ligand Explorer GU3 Search  Download  C8 H16 O12 S2 methyl 3-O-methyl-2,6-di-O-sulfo-alpha-D- glucopyranoside   Ligand Explorer GU4 Search  Download  C6 H8 O18 S4 2,3,4,6-TETRA-O-SULFONATO-ALPHA-D-GLUCOPYRANOSE   Ligand Explorer GU5 Search  Download  C8 H15 O9 S 2,3-DI-O-METHYL-6-O-SULFONATO-ALPHA-D-GLUCOPYRANOSE   Ligand Explorer GU6 Search  Download  C6 H9 O15 S3 2,3,6-TRI-O-SULFONATO-ALPHA-D-GLUCOPYRANOSE   Ligand Explorer GU8 Search  Download  C9 H18 O6 2,3,6-TRI-O-METHYL-BETA-D-GLUCOPYRANOSE   Ligand Explorer GU9 Search  Download  C9 H18 O6 2,3,6-TRI-O-METHYL-ALPHA-D-GLUCOPYRANOSE   Ligand Explorer MAN Search  Download  C6 H12 O6 ALPHA-D-MANNOSE   Ligand Explorer MPD Search  Download  C6 H14 O2 (4S)-2-METHYL-2,4-PENTANEDIOL   Ligand Explorer NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer NDG Search  Download  C8 H15 N O6 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE   Ligand Explorer     External Domain Annotations Hide SCOP Classification v1.75: 2 Domains - data from SCOP   CATH Classification v3.4.0: 5 Domains - data from CATH   Pfam Classification: 3 Domains - data from Pfam   GO Terms: 15 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Li, W.,  Johnson, D.J.,  Esmon, C.T.,  Huntington, J.A. Deposition:   2004-05-19 Release:   2004-08-17 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Non-polymer description 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.50 R-Value: 0.208 (work) R-Free: 0.245 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 88.41 α = 90.00  b = 88.40 β = 90.00  c = 117.22 γ = 90.00      Molecule of the Month Hide Thrombin Trypsin Serpins Tissue Factor Fibrin