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HhaI methyltransferase in complex with DNA containing an abasic south carbocyclic sugar at its target site
DOI:10.2210/pdb1skm/pdb   NDB ID: PD0528
1SKM
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 45247.09
    Molecule: 5'-D(*TP*CP*CP*AP*TP*GP*CP*GP*CP*TP*GP*AP*C)-3'
    Polymer: 1 Type: dna Length: 13
    Chains: C
    Molecule: 5'-D(*T*GP*TP*CP*AP*GP*(HCX)P*GP*CP*AP*TP*GP*G)-3'
    Polymer: 2 Type: dna Length: 13
    Chains: D
    Molecule: Modification methylase HhaI
    Polymer: 3 Type: protein Length: 327
    Chains: A
    EC#: 2.1.1.37   
    Organism Haemophilus haemolyticus
    Gene Name hhaIM
    UniProtKB:   Protein Feature View | Search PDB | P05102  
     
  •   Structure Validation Hide

    Download full validation report    

     
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Haemophilus haemolyticus   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1FJX   
    1HMY   
    1MHT   
    9MHT   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    SAH
    Search 
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    SAH C14 H20 N6 O5 S
    S-ADENOSYL-L-HOMOCYSTEINE
    SAH:1SKM
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    HCX
    Search 
    HCX C7 H13 O4 P nonPolymer
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0528
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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