1SJD

x-ray structure of o-succinylbenzoate synthase complexed with n-succinyl phenylglycine

Structural Biology Knowledgebase: 1SJD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.87 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.196

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1SJD

Classification: LYASE ISOMERASE

Total Structure Weight: 159302.22

Macromolecule Entities
Molecule Chains Length Organism Details
N-acylamino acid racemase A, B, C, D 368 Amycolatopsis sp. EC#: 4.2.1.113 IUBMB
Gene Name(s): Aaar menC

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NPG
Query on NPG

A, B, C, D N-SUCCINYL PHENYLGLYCINE
C12 H13 N O5
GQFHIYFXQQEWME-LLVKDONJSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.87 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.196
  • Space Group: H 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 215.20 α = 90.00
b = 215.20 β = 90.00
c = 257.60 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-03-03
  • Released Date: 2004-06-01
  • Deposition author(s): Thoden, J.B., Taylor-Ringia, E.A., Garrett, J.B., Gerlt, J.A., Holden, H.M., Rayment, I.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4